Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq279 113 5e-20 seq339 93.3 5e-14 >seq279 Length=1218690 Score = 113 bits (124), Expect = 5e-20 Identities = 300/447 (67%), Gaps = 16/447 (4%) Strand=Plus/Plus Query 59980 AACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTA 60039 |||| || | ||||| || ||||| ||||| ||||||||||| || |||||| | | Sbjct 624981 AACGAATCGTTGCTTTCGCTTGCGTTGAAGGTATCTTCTTCTCCGGAAGCTTCTGTTCCA 625040 Query 60040 TTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTT 60099 | |||||||| || || || || |||||||| || | | |||||| ||||| ||||| | Sbjct 625041 TCTTCTGGCTTAAGAAACGAGGACTCATGCCTGGGTTAACTTTCTCAAACGAACTGATCT 625100 Query 60100 CCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCTATTGGAA 60158 | || ||||| ||| | || || || || ||| | |||| ||| ||| || Sbjct 625101 CTCGAGACGAAGGCTTACACTGCGACTTCGC-GTGTCTTATCTACACACTCCT----CAA 625155 Query 60159 AAATGCCCTT-CCAAGGATATTCACAAGATTGTTCAGTGGGC----TTGTGAAG-TGGAG 60212 || ||| | | || ||| | | || ||| || |||| || | ||| Sbjct 625156 AACGAAGCTTAGCGAAGAGCGCGTGAAG-TCGATC-GTGTGCGACGCTGTGGAGATCGAG 625213 Query 60213 AGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGA-GAAAT 60271 || ||||| | || |||||||| ||| | | || ||| || | ||| || Sbjct 625214 AGGGAGTTTGTGTGCGACGCGCTTCCTTGCGCGTTGGTTGGGATGAAC-CAGGATTTGAT 625272 Query 60272 GACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCAAT 60331 || ||||| ||| ||||||| ||||| | || ||| | |||| | || | Sbjct 625273 GAGTCAGTATATTGAGTTTGTAGCGGATAGGCTTCTGGGTGCGCTTGGGTACGGTAAGGT 625332 Query 60332 TTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAA 60391 ||||| |||| ||| ||||| || |||||||| |||||| | ||||||||||||| Sbjct 625333 GTACGGTGTGACTAATCCTTTTGATTGGATGGAACTTATCTCGCTTCAAGGGAAGACCAA 625392 Query 60392 CTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||| ||||| || || || ||||| Sbjct 625393 CTTCTTCGAGAAACGCGTTGGCGATTA 625419 >seq339 Length=148954 Score = 93.3 bits (102), Expect = 5e-14 Identities = 201/294 (68%), Gaps = 10/294 (3%) Strand=Plus/Plus Query 59825 TATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAA 59884 |||||||||||||| ||| || | |||||| | |||| || |||||| Sbjct 22476 TATCCACTCCGAGATGTATAGTCTTCTCCTCGATACTTACATCAAAGACAACAAAGAGAG 22535 Query 59885 GGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGG 59943 | | ||| |||||||| || || ||| |||| || || | ||||| | |||| Sbjct 22536 AGATCATCTCTTCCGTGCGATTGAAACGATCCCTTGC-GTCGCGAAGAAAGCTCAGTGGG 22594 Query 59944 CCATGCAGTGGATGAGTCCTGGAGCATCA----TTTGCACAACGTCTCATAGCTTTTGCA 59999 | ||| | ||||| | | ||| | ||| || || |||| || | ||||| || Sbjct 22595 CGATGAAATGGATC-GAC--GGATC-TCAGACCTTCGCTGAACGAATCGTTGCTTTCGCT 22650 Query 60000 TGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGT 60059 || || ||||| ||||||||||| || |||||| | || |||||||| || || || Sbjct 22651 TGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTCTGTTCCATCTTCTGGCTTAAGAAACGA 22710 Query 60060 GGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGC 60113 || |||||||| || | | |||||| ||||| |||| || || ||||| ||| Sbjct 22711 GGACTCATGCCTGGGTTAACTTTCTCAAACGAATTGATCTCTCGAGACGAAGGC 22764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548468672199840