Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_028676.1 Length=149218 Score E Sequences producing significant alignments: (Bits) Value seq4050 102 8e-17 >seq4050 Length=1194 Score = 102 bits (112), Expect = 8e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 112670 GATCATGCCGAGAGCCTGGAGATAGGTGTCCAGGATAGCTTCCTGTTCCATGCGTTCATC 112729 || ||| || || ||||| | ||||| |||||||| | |||||| ||| || || || Sbjct 496 GAGCATCCCCAGCGCCTGCATGTAGGTTTCCAGGATGGTTTCCTGCTCCTGACGCTCGTC 555 Query 112730 AGCATCCTGTCGACGAAGAGCAATGACCTTTCGGAGAATCTTCGTGTCGAAGCCCATCGA 112789 || ||||| || | ||||| | || || | ||| ||| ||||| | Sbjct 556 GGCGTCCTGCTTGCGCATGCGAATGATGGTGCGCAGCACCTTGACGTCAAAGCCGTTGCC 615 Query 112790 CTTTGCTTCTCCGAAGACGTCCTTGATGTCATCGCCGATTGTCCGCTTCTCTTCTTCGAG 112849 ||| || || ||| || ||||||||||||| |||| ||| || ||| ||||| ||||| Sbjct 616 CTTGGCCTCGCCGTAGCCGTCCTTGATGTCGTCGCTGATGGTTTTCTTTTCTTCCTCGAG 675 Query 112850 GCGTTCGATACGCTCGATGAAAGCTCTCAGCTGA 112883 |||||||| |||||||||| || | |||||| Sbjct 676 CCGTTCGATGCGCTCGATGATGGCCTTGAGCTGA 709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477320753155680