Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq8107 484 8e-132 >seq8107 Length=1073 Score = 484 bits (536), Expect = 8e-132 Identities = 758/1079 (70%), Gaps = 13/1079 (1%) Strand=Plus/Minus Query 185972 CAGTTAGGTCTTGCACTTGCATCTCTAGGTGTTGTTACTAGTCTGGTGGCACAACATATG 186031 || ||||||||||| || || || |||| ||| | ||| |||| || ||||| ||| Sbjct 1073 CAATTAGGTCTTGCTCTAGCCTCCTTAGGAGTTATAACTTCCTTGGTAGCTCAACACATG 1014 Query 186032 TACTCAATGCCATCCTATGCTTTCATAGCACAGGCGCATACTACGCAAGCTGCTCTATAT 186091 ||||| | || | ||||| |||||||| || | || || |||||||| ||||| Sbjct 1013 TACTCTTTACCTGCTTATGCGTTCATAGCGCAAGATTTTATGACTCAAGCTGCGTTATAT 954 Query 186092 GTTCATCATCAATACATTGCA--ACTGCTCTGATGGTTGGTGCTTTTGCGCATGGAGCAA 186149 ||||| ||||| |||||| | | || ||| || |||||||| ||||| || | Sbjct 953 ACCCATCACCAATATATTGCAGGATTCATC--ATGACAGGAGCTTTTGCTCATGGCGCTA 896 Query 186150 TATTTTTTGTTAGAGACTTTGATCCTACTCTGAATAAGGACAATGTTCTTGATAGAATGC 186209 | |||||| ||||||| | |||| | |||| |||| || || | | |||||| Sbjct 895 TCTTTTTTATTAGAGATTACAATCCAGAACAGAATGAGGATAACGTATTAGCAAGAATGT 836 Query 186210 TACAGCACAAAGAAGCAATTATAAGTCACTTAAGTTGGGTATCACTATTCCTTGGATTCC 186269 || | || |||||||| || ||| || |||||||||| || || || || |||| Sbjct 835 TAGACCATAAAGAAGCTATCATATCCCATTTAAGTTGGGACAGCCTCTTTCTAGGGTTCC 776 Query 186270 ATACTTTAGGAATCTATGTCCATAATGATGTAGTAATGGCATTTGGTCATCCTGAGAGAC 186329 ||||||| ||| | ||||| |||||||| || | | || |||||| ||| || | || Sbjct 775 ATACTTTGGGACTTTATGTTCATAATGACGTCATGCTTGCTTTTGGTACTCCCGAAAAAC 716 Query 186330 AGATATTAATTGAACCTATATTTGCACAGTGGATACAGGCAGCATCA-GGTAAGATGATG 186388 | || || || ||||| |||||||| || |||||||| | || ||| || || | Sbjct 715 AAATCTTGATCGAACCCATATTTGCCCAATGGATACAATCTGC-TCATGGGAAAACTTCA 657 Query 186389 TATGGATTAAGTTTCTTACTATCTGATCCAAATAGTGCTGCAAGTCTAGCAG--CAGAGA 186446 |||||||| | | | ||||| ||| | | | ||| | || | | || Sbjct 656 TATGGATTTGATGTACTTTTATCTTCGACAAGTGGCCCAGCATTTAATGCGGGTCGAAGC 597 Query 186447 GTATGCCTGGTAATCATTACTGGATGAGTGCTATGAATGATCAAACAAACAGTCTGTTTC 186506 |||| || | | |||| | | |||||| ||||| | || | || Sbjct 596 ATATGGTTG-----CCTGGCTGGTTAAATGCTATTAATGAGAGTAGTAATTCATTATTCT 542 Query 186507 TACCAATAGGACCTGCTGATTTATTAGTTCATCATGCTATTGCACTTGGATTACATACTA 186566 || ||||||| |||| ||||| || ||||||||||||||||| | || |||||||| | Sbjct 541 TAACAATAGGTCCTGGAGATTTCTTGGTTCATCATGCTATTGCTTTAGGTTTACATACAA 482 Query 186567 CAACTTTAATCCTAGTCAAGGGTGCATTAGATGCTAGAGGTTCAAAACTCATACCAGATA 186626 | || || ||| |||| || ||||| |||||||| | ||||| || | || ||||||| Sbjct 481 CTACATTGATCTTAGTAAAAGGTGCTTTAGATGCACGTGGTTCCAAGTTAATGCCAGATA 422 Query 186627 AGAAAGATTTAGGATATTCATTCCCTTGTGATGGTCCAGGCAGAGGTGGTACTTGTGATA 186686 | || ||||| || ||| || ||||| |||||||| || |||||||||||||||||| Sbjct 421 AAAAGGATTTCGGGTATAGTTTTCCTTGCGATGGTCCGGGACGAGGTGGTACTTGTGATA 362 Query 186687 GTTCTGGTTGGGATGCTTTCTATCTCTCTGTGTTCTGGGCATTCAATACAATAGCATGGG 186746 ||| | |||||| || || ||| | |||| |||||| || ||||| || | ||||| Sbjct 361 TTTCGGCTTGGGACGCATTTTATTTGGCTGTTTTCTGGATGTTAAATACTATTGGATGGG 302 Query 186747 CAGATTTTTATTGGCACTGGAAGAACCTTGCTAGTTGGCAAGGTAATCAGGCACAATTCA 186806 |||||||||||| ||||| || | | ||||| ||||| |||| || | Sbjct 301 TTACTTTTTATTGGCATTGGAAACACATCACATTATGGCAGGGTAACGTTTCACAGTTTA 242 Query 186807 ATACATCAGGAACATATCTTATGGGTTGGTTCAGAGATTATCTCTGGGCGAATAGTGCGC 186866 || ||| || ||| | ||||| ||||| ||||||||||| ||| || | | | Sbjct 241 ATGAATCTTCCACTTATTTGATGGGATGGTTAAGAGATTATCTATGGTTAAACTCTTCAC 182 Query 186867 CTGTAATCACAGGGTACACACCATTTGGTATGAATAATCTCTCTGTATGGGCATGGATGT 186926 | |||| || || | || ||||||||||||| | | || || ||||||||||||| Sbjct 181 AACTTATCAATGGATATAACCCGTTTGGTATGAATAGTTTATCAGTCTGGGCATGGATGT 122 Query 186927 TCTTGTTTGGTCATTTAGTTTGGGCAACAGGATTTATGTTCCTTATTTCTTGGAGAGGTT 186986 |||| ||||| ||| | |||||||| ||||||||||||||| | ||||| ||| | |||| Sbjct 121 TCTTATTTGGGCATCTTGTTTGGGCTACAGGATTTATGTTCTTAATTTCCTGGCGTGGTT 62 Query 186987 ATTGGCAAGAGTTAATTGAGACTCTTGCTTGGGCACATCAAAGAACTCCAATAGCAAAT 187045 ||||||| || || ||||| ||| | || ||||| ||| || | || || | |||||| Sbjct 61 ATTGGCAGGAATTGATTGAAACTTTAGCATGGGCTCATGAACGCACACCTTTGGCAAAT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631362589211760