Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq165 102 7e-17 seq180 98.7 8e-16 seq248 91.5 1e-13 seq674 86.0 5e-12 >seq165 Length=664114 Score = 102 bits (112), Expect = 7e-17 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 118585 TTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCC 118644 ||||| || ||||| |||||||| || ||||| | ||| |||| ||| || || || || Sbjct 156214 TTAAATGGTACACCGAGACCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCT 156273 Query 118645 CCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTCAGT 118704 || |||||||||||||||||| | ||||| |||||||| || |||| | |||| Sbjct 156274 CCATTTGCAACATAAAACTGAGCAAACATGTGGCATGGAGGAAGTGCCATCAACTTCAGA 156333 Query 118705 TGGGCAGGATTCCAGGCTG 118723 | | ||||||||| |||| Sbjct 156334 TCAGGAGGATTCCAAGCTG 156352 >seq180 Length=4117863 Score = 98.7 bits (108), Expect = 8e-16 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 118585 TTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCC 118644 ||||| || ||||| |||||||| || ||||| | ||| |||| ||| || || || || Sbjct 3608156 TTAAATGGTACACCGAGACCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCT 3608215 Query 118645 CCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTCAGT 118704 || |||||||||||||||||| | ||||| |||||||| || |||| | |||| Sbjct 3608216 CCATTTGCAACATAAAACTGAGCAAACATGTGGCATGGAGGAAGTGCCATCAACTTCAGA 3608275 Query 118705 TGGGCAGGATTCCAGGCTG 118723 | | ||| ||||| |||| Sbjct 3608276 TCAGGAGGGTTCCAAGCTG 3608294 >seq248 Length=403725 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 118480 TGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCT 118539 ||||| | || |||||||||||||| || ||| || || |||||||| || Sbjct 23622 TGATTTCTGTACACATGAGCATCCCCTATAACATGGATAAAATCACCAGGAACGAGATTG 23563 Query 118540 GTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCC 118599 || ||||||| |||| | || | | | |||| || | ||||| || ||||| Sbjct 23562 CACACATGAGCAAGCATGCAAGTAAGAAGAGCGTAGGAAGCAATGTTAAACGGCACACCA 23503 Query 118600 AGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAA 118659 || |||||||||||||| | || |||| ||| || ||||| ||||| | ||| ||||| Sbjct 23502 AGGCCCATGTCTGCTGAACGTTGATACATTTGACACGAGAGTTCCCCTTCTGCCACATAG 23443 Query 118660 AACTG 118664 ||||| Sbjct 23442 AACTG 23438 >seq674 Length=261080 Score = 86.0 bits (94), Expect = 5e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 118480 TGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCT 118539 ||||| | || |||||||||||||| || ||| || || |||||||| || Sbjct 144350 TGATTTCTGTACACATGAGCATCCCCTATAACATGGATAAAATCACCAGGAACGAGATTG 144409 Query 118540 GTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCC 118599 || ||||||| |||| | || | | | |||| || | ||||| || ||||| Sbjct 144410 CACACATGAGCAAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCA 144469 Query 118600 AGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAA 118659 || |||||||||||||| | || |||| ||| || ||||| ||||| | ||| |||| Sbjct 144470 AGGCCCATGTCTGCTGAACGTTGATACATTTGACACGAGAGTTCCCCTTCTGCCGCATAG 144529 Query 118660 AACTG 118664 ||||| Sbjct 144530 AACTG 144534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414435448944904