Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq82 116 3e-21 seq61 113 3e-20 seq325 93.3 3e-14 seq233 93.3 3e-14 seq6139 89.7 4e-13 seq267 89.7 4e-13 seq99 89.7 4e-13 >seq82 Length=470516 Score = 116 bits (128), Expect = 3e-21 Identities = 159/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| |||||||| || ||||| || || || |||| ||||| ||| | Sbjct 88328 ATGCAAATTTTCGTGAAAACACTCACTGGTAAGACCATCACTCTTGAGGTCGAGAGCTCT 88269 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || ||| || ||||| ||||| |||| ||| | Sbjct 88268 GACACCATCGACAAT--GTTAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGACC 88211 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | || || || ||||| ||||| | || || | |||| |||| ||||||||| Sbjct 88210 AGCAAAGATTGATCTTCGCCGGTAAACAGCTTGAAGATGGCCGCACCTTGGCCGATTACA 88151 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007 ||||||| |||||| ||| | ||||||||| | ||||| Sbjct 88150 ACATCCAGAAAGAGTCCACCCTCCATTTGGTTCTCCGTTT 88111 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| ||||| || || ||| || || | || || || ||| | Sbjct 87872 ATGCAGATCTTTGTGAAGACTCTCACGGGTAAAACAATCACCCTAGAGGTTGAGAGCTCA 87813 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| |||||| || || || ||||| || |||| ||| | Sbjct 87812 GATACCATTGACAAT--GTCAAAGCTAAGATCCAAGATAAAGAGGGAATTCCACCGGATC 87755 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || |||||||| || || | || || | |||| |||| ||||||||| Sbjct 87754 AGCAGAGGCTTATCTTTGCCGGTAAGCAGCTAGAGGATGGTCGCACCTTGGCCGATTACA 87695 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| |||||| ||| | |||||||| | ||| || | || || Sbjct 87694 ACATCCAGAAAGAGTCCACCCTCCATTTGGTGCTTCGTCTGAGAGGTGG 87646 >seq61 Length=1440766 Score = 113 bits (124), Expect = 3e-20 Identities = 158/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| |||||||| || ||||| || || || |||| ||||| ||| | Sbjct 1073428 ATGCAAATTTTCGTGAAAACACTCACTGGTAAGACCATCACTCTTGAGGTCGAGAGCTCT 1073487 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || ||| || |||| ||||| |||| ||| | Sbjct 1073488 GACACCATCGACAAT--GTTAAGGCAAAGATCCAGGACAGGGAAGGCATTCCTCCGGACC 1073545 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | || || || ||||| ||||| | || || | |||| |||| ||||||||| Sbjct 1073546 AGCAAAGATTGATCTTCGCCGGTAAACAGCTTGAAGATGGCCGCACCTTGGCCGATTACA 1073605 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007 ||||||| |||||| ||| | ||||||||| | ||||| Sbjct 1073606 ACATCCAGAAAGAGTCCACCCTCCATTTGGTTCTCCGTTT 1073645 >seq325 Length=1091643 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || |||||||| || || || |||| || |||||| | Sbjct 552068 ATGCAAATCTTTGTTAAGACCCTTACTGGCAAGACCATAACTCTTGAAGTTGAAAGCTCT 552127 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| ||||| ||||| || || ||||| ||||| | | ||| | Sbjct 552128 GACACGATTGACAAT--GTCAAGGCCAAGATCCAAGACAAGGAAGGCATCACTCCGGACC 552185 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 |||| | | || |||||||| || ||| | || || | || | |||| | |||||| Sbjct 552186 AGCAGAGACTTATCTTTGCCGGCAAGCAACTCGAGGATGGTCGGACACTTG-CGGATTAC 552244 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| |||||| ||| ||||||||||| | ||| | ||||| ||| Sbjct 552245 AACATCCAGAAAGAGTCAACTCTGCATTTGGTTCTTCGTCTTCGTGGTGGC 552295 >seq233 Length=166549 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| |||||||| |||||||| || ||||| |||| || || ||| | Sbjct 103320 ATGCAAATTTTCGTGAAAACACTTACTGGCAAGACCATTACTCTTGAGGTAGAGAGCTCT 103379 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| || || ||| || ||||| ||||| | || ||| | Sbjct 103380 GACACTATCGACAAT--GTTAAGGCAAAGATTCAGGACAAGGAAGGGATCCCTCCGGATC 103437 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | || || |||||||| ||||| | || || | ||| | |||| | ||||||| Sbjct 103438 AGCAAAGATTGATCTTTGCCGGTAAACAGCTTGAGGATGGACGTACCTTGGCGGATTACA 103497 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 | ||||| || || ||| | || |||||| Sbjct 103498 ATATCCAGAAGGAATCAACTCTCCACTTGGTT 103529 >seq6139 Length=4094 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||| ||| | || ||| ||||| |||| || ||||| ||||| || ||||| Sbjct 229 GACAAAGAGGGTATCCCACCGGACCAGCAGAGGTTGATCTTTGCTGGAAAGCAGTTGGAG 170 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| | | |||| | || |||||||||||||| ||| || | || ||||| ||| Sbjct 169 GACGGCAGAACCTTGGCTGACTACAACATCCAAAAGGAGTCTACCCTTCACTTGGTCTTG 110 Query 28003 CGTTTGCGTGGCGG 28016 ||| ||||||| || Sbjct 109 CGTCTGCGTGGAGG 96 >seq267 Length=1500311 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||||||||| || ||||| ||| ||||| | || || || ||| | Sbjct 618186 ATGCAAATATTTGTGAAAACCCTCACTGGCAAAACCATTACTCTAGAAGTGGAGAGCTCA 618127 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| || || ||||| ||||| |||| ||| | Sbjct 618126 GACACAATAGACAAT--GTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCTCCGGACC 618069 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 |||| | | || |||||||| || ||| | || || | || | |||| | |||||| Sbjct 618068 AGCAGAGACTTATCTTTGCCGGCAAGCAACTCGAAGATGGTCGGACACTTG-CGGATTAC 618010 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| |||||| || | || |||||| | ||| | ||||| ||| Sbjct 618009 AACATCCAGAAAGAGTCAACACTACACTTGGTTCTTCGTCTTCGTGGTGGC 617959 >seq99 Length=1465915 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||| ||| | || ||| ||||| |||| || ||||| ||||| || ||||| Sbjct 434515 GACAAAGAGGGTATCCCACCGGACCAGCAGAGGTTGATCTTTGCTGGAAAGCAGTTGGAG 434456 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| | | |||| | || |||||||||||||| ||| || | || ||||| ||| Sbjct 434455 GACGGCAGAACCTTGGCTGACTACAACATCCAAAAGGAGTCTACCCTTCACTTGGTCTTG 434396 Query 28003 CGTTTGCGTGGCGG 28016 ||| ||||||| || Sbjct 434395 CGTCTGCGTGGAGG 434382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355826896720422