Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq280 105 6e-18 seq240 105 6e-18 seq69 93.3 4e-14 seq411 89.7 4e-13 seq7 86.0 5e-12 seq380 84.2 2e-11 seq187 84.2 2e-11 seq60 84.2 2e-11 >seq280 Length=1980472 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | || | ||||||||| || || |||||| || || || || ||||| Sbjct 1633037 CCTCCTCTCAGACGGAGCACCAAATGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCG 1632978 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGG 39176 ||||||| |||| || |||||||| || || || || ||||||||||||| ||| ||| Sbjct 1632977 AGTGTTCTCCCGTCTTCCAGCTGTTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGG 1632918 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || || ||||| ||| ||| ||| | | | | ||| || ||||| || Sbjct 1632917 ATCCCT-TCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATCGTGTCTGATGACTCTAC 1632859 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 || | || || | || ||||| | ||||| |||||||| ||||| ||| Sbjct 1632858 CTCTAGGGTTATCGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCATTTTT 1632807 >seq240 Length=230833 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | || | ||||||||| ||||| |||||| || || || || ||||| Sbjct 111266 CCTCCTCTCAGACGGAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGCG 111207 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGG 39176 ||||||| |||| || |||||||| || || || || || |||||||||| ||||||| Sbjct 111206 AGTGTTCTCCCGTCTTCCAGCTGTTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGGG 111147 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || || ||||| ||| || ||| | | | | ||| || ||||| || Sbjct 111146 ATCCCT-TCCTTGTCTTGGATCTTTGCTTTCACATTGTCGATCGTGTCTGATGACTCTAC 111088 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 || | || || | || ||||| | ||||| |||||||| ||||| ||| Sbjct 111087 CTCTAGGGTTATCGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCATTTTT 111036 >seq69 Length=1777342 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| ||||| || || || || || || ||||| || || || |||| || Sbjct 335998 CACCAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGCCGTCTTC 336057 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCA 39193 ||||| || || || ||||| | |||||||||| ||||||| | || || ||||| Sbjct 336058 CAGCTGCTTCCCGGCGAATATCAACCGCTGCTGGTCCGGTGGGATCCCT-TCCTTGTCTT 336116 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| ||| ||| | | | | ||| || ||||||||| || | || || | | Sbjct 336117 GGATCTTCGCTTTCACATTGTCGATCGTGTCTGACGACTCCACCTCTAGGGTTATGGTCT 336176 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 | ||||| || ||||| || ||||| ||||||||| Sbjct 336177 TCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 336211 >seq411 Length=621170 Score = 89.7 bits (98), Expect = 4e-13 Identities = 152/214 (71%), Gaps = 10/214 (5%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| || ||||| || ||||| |||||||| || | || ||| Sbjct 569652 ACCAAGTGAAGAGTCGACTCCTTCTGTATGTTGTAATCTGCAAGTGTCCGACCATCCTCA 569593 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||| || || || || || | |||||||| ||| ||| | || || |||||| Sbjct 569592 AGCTGTTTTCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGGATCCCT-TCCTTGTCCTG 569534 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCCACCGTGATAC 39250 || || |||| ||| | | | || || ||| ||| || |||| ||||||| Sbjct 569533 TATCTTGGCCTTGA-CGTTGTCAATGGTGTCTGAGCT---CTCAACCTCCAACGTGATAG 569478 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| || || |||||||||||||| Sbjct 569477 TCTTGCCTGTCAAAGTCTTCACAAAGATTTGCAT 569444 >seq7 Length=486845 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 39066 TAAGCGT-AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTC 39124 ||||| | || ||||| || || || |||||| || ||||| ||||| |||||||||| Sbjct 251230 TAAGCCTCAAGACCAAGTGAAGAGTCGACTCTTTCTGGATATTGTAATCCGCAAGTGTTC 251171 Query 39125 GTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCT 39184 | | || ||||| ||||| || |||||||| || | ||| || || | || | | || Sbjct 251170 GACCATCTTCAAGTTGTTTACCAGCAAATATCAGCCTCTGTTGATCCGGTGGTATCCCCT 251111 Query 39185 CTTTGTCCATGATTTTCT 39202 |||||||| || |||||| Sbjct 251110 CTTTGTCC-TG-TTTTCT 251095 >seq380 Length=167695 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| ||||| || || || || || || || || || || || |||| || Sbjct 104834 CACCAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCCGCCAGAGTGCGGCCGTCTTC 104893 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCA 39193 ||||| || || || ||||| | |||||||||| ||||||| | || || ||||| Sbjct 104894 CAGCTGCTTCCCGGCGAATATCAACCGCTGCTGGTCCGGTGGGATCCCT-TCCTTGTCTT 104952 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| ||| ||| | | | | ||| || |||||| || || | || || | | Sbjct 104953 GGATCTTCGCTTTCACATTGTCGATCGTGTCTGACGACTCGACCTCTAGGGTTATGGTCT 105012 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 | ||||| || ||||| || ||||| ||||||||| Sbjct 105013 TCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 105047 >seq187 Length=905850 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 || ||||| || || || |||||| || ||||| ||||| |||||||||||| | || Sbjct 508444 AAGACCAAGTGAAGAGTCGACTCTTTCTGGATATTGTAATCAGCAAGTGTTCGTCCATCT 508503 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 || || ||||| || |||||||| || | ||| || || | || | | |||||||||| Sbjct 508504 TCGAGTTGTTTACCAGCAAATATCAGCCTCTGTTGATCCGGTGGTATCCCCTCTTTGTCC 508563 Query 39193 ATGATTTTCT 39202 || |||||| Sbjct 508564 -TG-TTTTCT 508571 >seq60 Length=318476 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/214 (71%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| || || || || ||||| |||||||| || | || ||| Sbjct 55184 ACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCTGCAAGTGTCCGACCATCCTCA 55243 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||| || || || || || | |||||||| ||| ||| | || || |||||| Sbjct 55244 AGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGGATCCCT-TCCTTGTCCTG 55302 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCCACCGTGATAC 39250 || || |||| ||| | | | || || ||| ||| || |||| ||||||| Sbjct 55303 AATCTTAGCCTTGA-CGTTGTCAATGGTGTCTGAGCT---CTCAACCTCCAACGTGATAG 55358 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| || || |||||||||||||| Sbjct 55359 TCTTGCCTGTCAAAGTCTTCACAAAGATTTGCAT 55392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429502745577818