Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq279 161 1e-34 seq140 105 9e-18 seq339 102 1e-16 seq127 102 1e-16 seq126 93.3 6e-14 seq191 84.2 3e-11 >seq279 Length=1218690 Score = 161 bits (178), Expect = 1e-34 Identities = 402/601 (67%), Gaps = 17/601 (3%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| || || || || || | ||||| |||| | || | |||||| || || || | Sbjct 625135 ACACGCGAAGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAGTTCGTTTGAGAAAGTTAA 625076 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 || ||||| ||||| ||||| || ||||| || || | ||| ||| || ||||| Sbjct 625075 CCCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAA 625016 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA--CTG-GCTTCGTTGTG 48316 || ||||| ||| || || || | || || || | ||| | | ||| | Sbjct 625015 GATACCTTCAACGCAAGCGAAAGCAACGATTCGTTCAGCGAAGGTCTGAGATCCGTCG-- 624958 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||| ||||| | ||| |||||| |||||||| || || || || ||| Sbjct 624957 -ATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACACAAGGAATCGTCTCAATCGCACG 624899 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436 |||||| || | | || ||| | ||||| | ||||||||| | | |||||||||||| Sbjct 624898 GAAGAGATGGTCTCTCTCTTTGTTGTCTTTGATGTAAGTATCGAGAAGAAGACTATACAT 624839 Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGAT 48496 || ||||| ||||| ||||| || ||||| || ||||| ||| | ||| || | || Sbjct 624838 CTCAGAGTGTATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGAC 624779 Query 48497 CTGTACCTCCGTACA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 || || | || ||| || || || | |||||| || || || || |||| Sbjct 624778 TTGGACAT-CGGACATGAACCGAGATGCGAGATTCTCTAGAACGATACCGTCGGAGGCAG 624720 Query 48556 CAAAAAATGCTAATACATGTTTAATAAAAT-ATTTT-----TCGTTGGAAGTCAGTTTAT 48609 | || || || | || ||||| || || | | || |||||| || | | || | Sbjct 624719 CGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCGCCGTCGTTG--AGACTG-TTCT 624663 Query 48610 TCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTG 48669 ||| || | | |||| ||||| |||||||||||| || ||||| || ||||| || | Sbjct 624662 CCCAATCGCGGTTGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGG 624603 Query 48670 CTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTG 48729 |||| || ||||| | ||| || | ||| ||||||||||| ||| ||||| | || Sbjct 624602 CTTTCTTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACATACAGAATCTGTCTG 624543 Query 48730 G 48730 | Sbjct 624542 G 624542 >seq140 Length=1024829 Score = 105 bits (116), Expect = 9e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| || || | ||| | || || | ||| | || | || |||||||| ||||||| Sbjct 727285 CCTCCTTGGTCGACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACCG 727344 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||||||||||||||| ||| ||| ||||||||| |||| ||||||||| || || Sbjct 727345 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAACTGAA 727404 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || || || || || ||| | ||| || ||| | ||| || || || Sbjct 727405 ACACCAATACCGCCGGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATATG 727464 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 || || || || ||||| ||||| | ||||| ||||| Sbjct 727465 CCTTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 727505 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| || || || | || ||||||||||| ||||||||| | | ||| | | || | Sbjct 727611 GTTCCAGCGTTGAAAAGAGTAGGAGATGCATGAGTAAACCATCTCTGAGACATCAAATGG 727670 Query 78459 TATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||||| || || || || || || | ||| ||||| || || ||||| | ||||| Sbjct 727671 TATGTTTGGATTGCGGAGTCAATATCATCCTTG-TGAATGCCAACAGCTACCCTCATCAG 727729 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| || ||||| || ||||| || | | ||| || | ||||||| | || | Sbjct 727730 CATGTGTTGAGGCCTCTCAACAACTTTCCCTTGGACTTTTAAGAGGTATGATCTCTCAAG 727789 Query 78578 AGTTTTAAAACCAAA 78592 ||||||||| || || Sbjct 727790 AGTTTTAAATCCGAA 727804 >seq339 Length=148954 Score = 102 bits (112), Expect = 1e-16 Identities = 221/328 (67%), Gaps = 6/328 (2%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| || || || || || | ||||| |||| | || |||||||| || || || | Sbjct 22785 ACACGCGAAGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAA 22726 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 || ||||| ||||| ||||| || ||||| || || | ||| ||| || ||||| Sbjct 22725 CCCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAA 22666 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA--CTG-GCTTCGTTGTG 48316 || ||||| || || || || | || || || | ||| | | ||| | Sbjct 22665 GATACCTTCAACACAAGCGAAAGCAACGATTCGTTCAGCGAAGGTCTGAGATCCGTCG-- 22608 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||| ||||| | ||| |||||| || ||||| || ||||| || ||| Sbjct 22607 -ATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGGATCGTTTCAATCGCACG 22549 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436 |||||| | | | || ||| | ||||| | ||||||||| | | |||||||||||| Sbjct 22548 GAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTATCGAGGAGAAGACTATACAT 22489 Query 48437 TTCGGAGTGAATATTTTCAATTGCCATC 48464 |||||||| ||||| ||||| || ||| Sbjct 22488 CTCGGAGTGGATATTCTCAATCGCGATC 22461 >seq127 Length=1358402 Score = 102 bits (112), Expect = 1e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| || || | ||| | || || | ||| | || | || |||||||| |||||| Sbjct 1059920 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACCA 1059979 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||||||||||||||| ||| ||| |||||||| |||| || |||||| | || Sbjct 1059980 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCGGTTGCACGGATATTATGAGCTGAA 1060039 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || || ||||| ||| ||| | ||| || ||| | ||| || || || Sbjct 1060040 ACACCAATACCACCTGCAGATTTACTTATAACAGCACACTCTTTGAGTGTTTCATATATG 1060099 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || || ||||| ||||| | | ||||||||| Sbjct 1060100 CCCTCAATGCTATCATCTTTCATGCACACCAAAAAACAGCT 1060140 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/197 (73%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| || || || | || ||||||||||| ||||||||| | | ||| | | || Sbjct 1060277 AGTTCCAGCGTTGAAGAGAGTAGGAGATGCATGAGTAAACCATCTCTGAGACATCAAATG 1060336 Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516 ||| |||| || || || || || || | ||| ||||| || || ||||| | ||||| Sbjct 1060337 GTAAGTTTGGATTGCGGAATCAATATCATCCTTG-TGAATGCCCACAGCTACCCTCATCA 1060395 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATT-TATTTTCAACAAGTATGATTTTTCC 78575 ||| || ||||| ||||||| | ||| | || | ||| || | ||||||| | || Sbjct 1060396 GCATGTGTTGAGGCCTTTCAA-CAACTTTTCCTTGGACTTTTAAGAGGTATGATCTCTCA 1060454 Query 78576 AAAGTTTTAAAACCAAA 78592 | ||||||||| ||||| Sbjct 1060455 AGAGTTTTAAATCCAAA 1060471 >seq126 Length=830300 Score = 93.3 bits (102), Expect = 6e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| || || | ||| | || || | ||| | || | || |||||||| |||||| Sbjct 568398 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACCA 568457 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTA 78269 ||||||||||||||||| ||| ||| ||||||||| |||| ||||||||| Sbjct 568458 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTA 568508 >seq191 Length=957377 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 77141 CAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAA 77200 ||| ||||||||| | ||||| || |||||| ||||| | | |||||||||| || | Sbjct 348334 CAAGACTCTACGACTATAAATGTTTGAGGTATAAGGTTCAAAACATTCATTGTTCCCAAG 348275 Query 77201 AATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCAT 77259 ||| || || |||||||||||||| |||||||| | | | |||||||| |||| Sbjct 348274 AATCTGGCTGGTTGAAGCAGTTGGCATTGGTGCCACTAGAAGAGAATTTCTGATTCCAT 348216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694597718015040