Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq279 127 3e-24 seq140 120 4e-22 seq477 116 5e-21 seq339 96.9 5e-15 seq127 93.3 6e-14 seq126 87.8 3e-12 >seq279 Length=1218690 Score = 127 bits (140), Expect = 3e-24 Identities = 393/599 (66%), Gaps = 13/599 (2%) Strand=Plus/Minus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| || || || || || | |||||| |||| | || | |||||| || || || | Sbjct 625135 ACACGCGAAGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAGTTCGTTTGAGAAAGTTAA 625076 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748 ||||||||| ||||| || || || ||||| || || | ||| ||| || ||||| Sbjct 625075 CCCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAA 625016 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA--CTGGCATCATTATGA 46806 || ||||| || ||||| || || | || || || | ||| ||| | Sbjct 625015 GATACCTTCAACGCAAGCGAAAGCAACGATTCGTTCAGCGAAGGTCTGAGATCCGTCG-- 624958 Query 46807 ATCCACCTTTGA--GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCAT 46864 ||||| ||| | ||||| | ||| || ||| |||||||| || || || || ||| Sbjct 624957 ATCCA--TTTCATCGCCCACTGAGCTTTCTTCGCGACACAAGGAATCGTCTCAATCGCAC 624900 Query 46865 TAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACA 46924 |||||| || | | || | | ||||| | || ||||| | | ||||||||||| Sbjct 624899 GGAAGAGATGGTCTCTCTCTTTGTTGTCTTTGATGTAAGTATCGAGAAGAAGACTATACA 624840 Query 46925 TTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 46984 | || || || || || ||||| || ||||| || ||||| ||| | || || | | Sbjct 624839 TCTCAGAGTGTATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGA 624780 Query 46985 TCTGTACCTCTGTACA-AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCA 47043 || || || | ||| || || | | |||||| || || || || ||| Sbjct 624779 CTTGGACATC-GGACATGAACCGAGATGCGAGATTCTCTAGAACGATACCGTCGGAGGCA 624721 Query 47044 GCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG--GTAGTCAGT-TTATTC 47100 || || || || | || ||||| || || | ||| || || | | | || | | Sbjct 624720 GCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCGCCGTCGTTGAGACTGTTCTCC 624661 Query 47101 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCT 47160 || || | | |||| ||||| |||||||||||| || |||||||| || || || ||| Sbjct 624660 CAATCGCGGTTGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCT 624601 Query 47161 TTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGG 47219 || || ||||| | ||| || | | || ||||| || || ||| ||||| | ||| Sbjct 624600 TTCTTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACATACAGAATCTGTCTGG 624542 >seq140 Length=1024829 Score = 120 bits (132), Expect = 4e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| || || | ||| | ||||| | ||| | || | || |||||||| ||| ||| Sbjct 727285 CCTCCTTGGTCGACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACCG 727344 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| |||||||| ||| ||| ||||||||| ||||||||||||| || || Sbjct 727345 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAACTGAA 727404 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || || || || ||| || | |||||| ||| | ||| ||||| ||| Sbjct 727405 ACACCAATACCGCCGGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATATG 727464 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 || || || |||||||| ||||| | ||||| ||||| Sbjct 727465 CCTTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 727505 Score = 87.8 bits (96), Expect = 3e-12 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 76085 AGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTG 76144 |||||||||||||| || || || || || |||||||||||||||||||| | | | || Sbjct 725959 AGAATAAATGCATCAGCAAGACCTTGTACACCAATACCAATAGGTCTATGACGCATGTTT 726018 Query 76145 GAAATTTCAGC-TTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATT 76200 ||| ||| || ||| | ||| || ||||| | |||||| || ||||||||||| Sbjct 726019 GAAGTTTTTGCAGTCT-CCACAGGATAGTAATTCACATCTATTATCTTATTGAGATT 726074 Score = 84.2 bits (92), Expect = 3e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| || || || | ||||||||||||||||| |||||| | | ||| | | || | Sbjct 727611 GTTCCAGCGTTGAAAAGAGTAGGAGATGCATGAGTAAACCATCTCTGAGACATCAAATGG 727670 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||||| || | | || ||||| | ||| ||||| || ||||| || | ||||| Sbjct 727671 TATGTTTGGATTGCGGAGTCAATATCATCCTTG-TGAATGCCAACAGCTACCCTCATCAG 727729 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| || ||||| | || ||| || | | ||| || | ||||||| | || | Sbjct 727730 CATGTGTTGAGGCCTCTCAACAACTTTCCCTTGGACTTTTAAGAGGTATGATCTCTCAAG 727789 Query 77173 AGTTTTAAAACCAAA 77187 ||||||||| || || Sbjct 727790 AGTTTTAAATCCGAA 727804 >seq477 Length=1203188 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| || || | || | ||||| | ||| | || | || |||||||| ||| || Sbjct 20439 CCTCCTTGGTCAACGTAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACAATACCA 20380 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||||| || ||||| ||| ||| ||||||||| |||||||| || || ||| Sbjct 20379 TTAGATGCTCCGTTTGTGCCACGAATGTAACTTCCAGTGGCACGAATGTTGTGAACTGAT 20320 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || || ||||| ||| || | |||||| |||||| ||||||||||| Sbjct 20319 ACACCAATACCCCCTGCTGATTTGCTTATAACAGCACACTCTTTCAACGTGTCATAGATT 20260 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||| || ||||||||| ||||| | ||||| |||||| Sbjct 20259 CCCTCGATGCTATCATCCTTCATGCAGATCAGAAAGCAGCTA 20218 >seq339 Length=148954 Score = 96.9 bits (106), Expect = 5e-15 Identities = 221/329 (67%), Gaps = 8/329 (2%) Strand=Plus/Minus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| || || || || || | |||||| |||| | || |||||||| || || || | Sbjct 22785 ACACGCGAAGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAA 22726 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748 ||||||||| ||||| || || || ||||| || || | ||| ||| || ||||| Sbjct 22725 CCCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAA 22666 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA--CTGGCATCATTATGA 46806 || ||||| ||| ||||| || || | || || || | ||| ||| | Sbjct 22665 GATACCTTCAACACAAGCGAAAGCAACGATTCGTTCAGCGAAGGTCTGAGATCCGTCG-- 22608 Query 46807 ATCCACCTTTGA--GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCAT 46864 ||||| ||| | ||||| | ||| || ||| || ||||| || ||||| || ||| Sbjct 22607 ATCCA--TTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGGATCGTTTCAATCGCAC 22550 Query 46865 TAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACA 46924 |||||| | | | || | | ||||| | || ||||| | | ||||||||||| Sbjct 22549 GGAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTATCGAGGAGAAGACTATACA 22490 Query 46925 TTTCTGAATGAATGTTTTCAATAGCCATC 46953 | || || || || || ||||| || ||| Sbjct 22489 TCTCGGAGTGGATATTCTCAATCGCGATC 22461 >seq127 Length=1358402 Score = 93.3 bits (102), Expect = 6e-14 Identities = 142/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| || || || | ||||||||||||||||| |||||| | | ||| | | || Sbjct 1060277 AGTTCCAGCGTTGAAGAGAGTAGGAGATGCATGAGTAAACCATCTCTGAGACATCAAATG 1060336 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 ||| |||| || | | || ||||| | ||| ||||| || ||||| || | ||||| Sbjct 1060337 GTAAGTTTGGATTGCGGAATCAATATCATCCTTG-TGAATGCCCACAGCTACCCTCATCA 1060395 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATT-TATTTTCAACAAGTATGATTTTTCC 77170 ||| || ||||| | ||| ||| ||| | || | ||| || | ||||||| | || Sbjct 1060396 GCATGTGTTGAGGCCTTTCAACA-ACTTTTCCTTGGACTTTTAAGAGGTATGATCTCTCA 1060454 Query 77171 AAAGTTTTAAAACCAAA 77187 | ||||||||| ||||| Sbjct 1060455 AGAGTTTTAAATCCAAA 1060471 Score = 87.8 bits (96), Expect = 3e-12 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 76085 AGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTG 76144 |||||||||||||| || || || || || |||||||||||||||||||| | | | || Sbjct 1058635 AGAATAAATGCATCAGCAAGACCTTGTACACCAATACCAATAGGTCTATGACGCATGTTT 1058694 Query 76145 GAAATTTCAGC-TTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATT 76200 ||| ||| || ||| | ||| || ||||| | |||||| || ||||||||||| Sbjct 1058695 GAAGTTTTTGCAGTCT-CCACAGGATAGTAATTCACATCTATTATCTTATTGAGATT 1058750 >seq126 Length=830300 Score = 87.8 bits (96), Expect = 3e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| || || | ||| | ||||| | ||| | || | || |||||||| ||| || Sbjct 568398 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACCA 568457 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTA 76864 |||||||| |||||||| ||| ||| ||||||||| ||||||||||||| Sbjct 568458 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTA 568508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712861448987520