Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq6872 149 8e-31 seq353 149 8e-31 seq351 149 8e-31 >seq6872 Length=15469 Score = 149 bits (164), Expect = 8e-31 Identities = 138/175 (79%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 171004 TTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGTGCTT 171063 ||||||| |||||||| ||||| ||| | |||||| || || || ||||||||| ||| Sbjct 14814 TTCTTGACGCTGCTGAGGAAGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCTT 14755 Query 171064 GTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCTTTCC 171123 |||||| ||||||||| ||| ||| | ||| |||||||| || || || || ||||| Sbjct 14754 GTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCC 14695 Query 171124 TTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCATATCCTAC 171178 |||||||||| |||||||| |||| || |||| ||||| | | | |||||||| Sbjct 14694 TTGATGATGAGCAGATTGATGCAGGGTTTGTTCTCACCTGTGCCGCTTATCCTAC 14640 >seq353 Length=447834 Score = 149 bits (164), Expect = 8e-31 Identities = 138/175 (79%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 171004 TTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGTGCTT 171063 ||||||| |||||||| ||||| ||| | |||||| || || || ||||||||| ||| Sbjct 266837 TTCTTGACGCTGCTGAGGAAGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCTT 266896 Query 171064 GTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCTTTCC 171123 |||||| ||||||||| ||| ||| | ||| |||||||| || || || || ||||| Sbjct 266897 GTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCC 266956 Query 171124 TTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCATATCCTAC 171178 |||||||||| |||||||| |||| || |||| ||||| | | | |||||||| Sbjct 266957 TTGATGATGAGCAGATTGATGCAGGGTTTGTTCTCACCTGTGCCGCTTATCCTAC 267011 >seq351 Length=837821 Score = 149 bits (164), Expect = 8e-31 Identities = 138/175 (79%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 171004 TTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGTGCTT 171063 |||||||||||||||| ||||| ||| | |||||| || || || ||||||||| ||| Sbjct 562157 TTCTTGATGCTGCTGAGGAAGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCTT 562098 Query 171064 GTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCTTTCC 171123 |||||| ||| ||||| ||| ||| | ||| |||||||| || || || || ||||| Sbjct 562097 GTTCGAGCTGCGCTGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCC 562038 Query 171124 TTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCATATCCTAC 171178 |||||||||| |||||||| |||| || |||| ||||| | | | |||||||| Sbjct 562037 TTGATGATGAGCAGATTGATGCAGGGTTTGTTCTCACCTGTGCCGCTTATCCTAC 561983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622006746646320