Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq6872 96.9 4e-15 seq353 96.9 4e-15 seq351 96.9 4e-15 >seq6872 Length=15469 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 161539 GTGTGAAGACGACCAGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTA 161598 |||||| |||||| ||| |||||||||| ||||||||||| || | || | || Sbjct 14834 GTGTGACGACGACGTCTACGTTCTTGACGCTGCTGAGGAAGCTGGAATCGATTTGCCTTA 14775 Query 161599 CTCGTGTCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGA 161658 ||| || ||||| || |||||||| || || || ||| | || ||||| | || || Sbjct 14774 CTCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGA 14715 Query 161659 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTG 161718 ||| |||||| ||||| || ||||| || || ||| | || || |||| || || Sbjct 14714 CCAGTCTGACCAGAGTTTCCTTGATGATGAGCAGATTGATGCAGGGTTTGTTCTCACCTG 14655 Query 161719 TGTTTCTTATCCCACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGA 161769 || ||||||| || ||| | ||||| || | |||||||| || Sbjct 14654 TGCCGCTTATCCTACCTCTGATGTTACCATTGAAACCCACAAAGAAGAAGA 14604 >seq353 Length=447834 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 161539 GTGTGAAGACGACCAGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTA 161598 |||||| |||||| ||| |||||||||| ||||||||||| || | || | || Sbjct 266817 GTGTGACGACGACGTCTACGTTCTTGACGCTGCTGAGGAAGCTGGAATCGATTTGCCTTA 266876 Query 161599 CTCGTGTCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGA 161658 ||| || ||||| || |||||||| || || || ||| | || ||||| | || || Sbjct 266877 CTCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGA 266936 Query 161659 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTG 161718 ||| |||||| ||||| || ||||| || || ||| | || || |||| || || Sbjct 266937 CCAGTCTGACCAGAGTTTCCTTGATGATGAGCAGATTGATGCAGGGTTTGTTCTCACCTG 266996 Query 161719 TGTTTCTTATCCCACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGA 161769 || ||||||| || ||| | ||||| || | |||||||| || Sbjct 266997 TGCCGCTTATCCTACCTCTGATGTTACCATTGAAACCCACAAAGAAGAAGA 267047 >seq351 Length=837821 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 161539 GTGTGAAGACGACCAGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTA 161598 |||||| |||||| ||| ||||||| || ||||||||||| || | || | || Sbjct 562177 GTGTGACGACGACGTCTACGTTCTTGATGCTGCTGAGGAAGCTGGAATCGATTTGCCTTA 562118 Query 161599 CTCGTGTCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGA 161658 ||| || ||||| || |||||||| ||||| || ||| | || ||||| | || || Sbjct 562117 CTCTTGCCGTGCTGGTTCTTGTTCGAGCTGCGCTGGTAAAGTTGTGTCTGGATCTGTTGA 562058 Query 161659 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTG 161718 ||| |||||| ||||| || ||||| || || ||| | || || |||| || || Sbjct 562057 CCAGTCTGACCAGAGTTTCCTTGATGATGAGCAGATTGATGCAGGGTTTGTTCTCACCTG 561998 Query 161719 TGTTTCTTATCCCACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGA 161769 || ||||||| || ||| | ||||| || | |||||||| || Sbjct 561997 TGCCGCTTATCCTACCTCTGATGTTACCATTGAAACCCACAAAGAAGAAGA 561947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557597338013520