Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq6872 109 7e-19 seq353 109 7e-19 seq351 109 7e-19 >seq6872 Length=15469 Score = 109 bits (120), Expect = 7e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 176152 TTGAGTGTGCTGACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCA 176211 ||||||||| ||||| || |||| || |||||||||||||| ||| | || | Sbjct 14838 TTGAGTGTGACGACGACGTCTACGTTCTTGACGCTGCTGAGGAAGCTGGAATCGATTTGC 14779 Query 176212 ACTACTCGTGCCGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGG 176271 ||||| ||||| |||||| | |||||||| ||||| || ||| | | || || | | Sbjct 14778 CTTACTCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTG 14719 Query 176272 TAGATCAAAGCGATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGA 176331 | || || || || |||||||||||||| ||||| |||||||| || |||| | Sbjct 14718 TTGACCAGTCTGACCAGAGTTTCCTTGATGATGAGCAGATTGATGCAGGGTTTGTTCTCA 14659 Query 176332 CTTGTGTTTCATATCCTACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGA 176386 | |||| | |||||||| ||| | ||||| || | |||||||| || Sbjct 14658 CCTGTGCCGCTTATCCTACCTCTGATGTTACCATTGAAACCCACAAAGAAGAAGA 14604 >seq353 Length=447834 Score = 109 bits (120), Expect = 7e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 176152 TTGAGTGTGCTGACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCA 176211 ||||||||| ||||| || |||| || |||||||||||||| ||| | || | Sbjct 266813 TTGAGTGTGACGACGACGTCTACGTTCTTGACGCTGCTGAGGAAGCTGGAATCGATTTGC 266872 Query 176212 ACTACTCGTGCCGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGG 176271 ||||| ||||| |||||| | |||||||| ||||| || ||| | | || || | | Sbjct 266873 CTTACTCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTG 266932 Query 176272 TAGATCAAAGCGATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGA 176331 | || || || || |||||||||||||| ||||| |||||||| || |||| | Sbjct 266933 TTGACCAGTCTGACCAGAGTTTCCTTGATGATGAGCAGATTGATGCAGGGTTTGTTCTCA 266992 Query 176332 CTTGTGTTTCATATCCTACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGA 176386 | |||| | |||||||| ||| | ||||| || | |||||||| || Sbjct 266993 CCTGTGCCGCTTATCCTACCTCTGATGTTACCATTGAAACCCACAAAGAAGAAGA 267047 >seq351 Length=837821 Score = 109 bits (120), Expect = 7e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 176152 TTGAGTGTGCTGACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCA 176211 ||||||||| ||||| || |||| ||||||||||||||||| ||| | || | Sbjct 562181 TTGAGTGTGACGACGACGTCTACGTTCTTGATGCTGCTGAGGAAGCTGGAATCGATTTGC 562122 Query 176212 ACTACTCGTGCCGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGG 176271 ||||| ||||| |||||| | |||||||| || || || ||| | | || || | | Sbjct 562121 CTTACTCTTGCCGTGCTGGTTCTTGTTCGAGCTGCGCTGGTAAAGTTGTGTCTGGATCTG 562062 Query 176272 TAGATCAAAGCGATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGA 176331 | || || || || |||||||||||||| ||||| |||||||| || |||| | Sbjct 562061 TTGACCAGTCTGACCAGAGTTTCCTTGATGATGAGCAGATTGATGCAGGGTTTGTTCTCA 562002 Query 176332 CTTGTGTTTCATATCCTACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGA 176386 | |||| | |||||||| ||| | ||||| || | |||||||| || Sbjct 562001 CCTGTGCCGCTTATCCTACCTCTGATGTTACCATTGAAACCCACAAAGAAGAAGA 561947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596246182865760