Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= AC_000010.1 Length=35524 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 3e-14 >seq1 Length=19566579 Score = 91.5 bits (100), Expect = 3e-14 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 17868 CCAACAGAAGGTGGTTGATGGGATCGCCTCTGGTATTAATGGGGTGGTGGATCTGGCCAA 17927 |||||| |||||||| ||||| | |||||||| |||| ||||||||||| |||||||| Sbjct 3968810 CCAACAAAAGGTGGTAGATGGCCTGGCCTCTGGCATTAGCGGGGTGGTGGACCTGGCCAA 3968869 Query 17928 CCAGGCCGTGCAGAAACAGATA 17949 |||||| ||||| ||| ||||| Sbjct 3968870 CCAGGCAGTGCA-AAATAGATA 3968890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113554157634236