Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= AC_000017.1 Length=36001 Score E Sequences producing significant alignments: (Bits) Value seq1 140 7e-29 >seq1 Length=19566579 Score = 140 bits (154), Expect = 7e-29 Identities = 77/77 (100%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 18249 CCAACAAAAGGTGGTAGATGGCCTGGCCTCTGGCATTAGCGGGGTGGTGGACCTGGCCAA 18308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3968810 CCAACAAAAGGTGGTAGATGGCCTGGCCTCTGGCATTAGCGGGGTGGTGGACCTGGCCAA 3968869 Query 18309 CCAGGCAGTGCAAAATA 18325 ||||||||||||||||| Sbjct 3968870 CCAGGCAGTGCAAAATA 3968886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 115080543622838