Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= AC_000018.1 Length=35514 Score E Sequences producing significant alignments: (Bits) Value seq1 82.4 2e-11 >seq1 Length=19566579 Score = 82.4 bits (90), Expect = 2e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 18028 CCAACAGAAGGTGGTCGATGGGATCGCCTCTGGTATTAACGGCGTAGTGGATCTGGCCAA 18087 |||||| |||||||| ||||| | |||||||| |||| ||| || ||||| |||||||| Sbjct 3968810 CCAACAAAAGGTGGTAGATGGCCTGGCCTCTGGCATTAGCGGGGTGGTGGACCTGGCCAA 3968869 Query 18088 CCAGGCTGTACAAAA 18102 |||||| || ||||| Sbjct 3968870 CCAGGCAGTGCAAAA 3968884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113522157927976