Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq5 138 2e-27 seq7 98.7 2e-15 seq6 98.7 2e-15 seq4 98.7 2e-15 seq1 98.7 2e-15 seq2 84.2 5e-11 >seq5 Length=13709650 Score = 138 bits (152), Expect = 2e-27 Identities = 562/872 (64%), Gaps = 24/872 (3%) Strand=Plus/Minus Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809 |||| | |||||||||||| || || | || ||||| ||||||||||| || | ||| Sbjct 2138770 TTCTGTATGTTCCCAATCCACTACCCACAGATCTGGGAGATGTACAAGAAAGCCGAAGCA 2138711 Query 229810 ACTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAA- 229868 | ||||||||| |||| ||||| ||| |||| | ||| ||| ||||| Sbjct 2138710 TCCTTCTGGACCGCTGAAGAAGTAGATCTCTCACAAGACAACCGCGATTGG---GAGAAC 2138654 Query 229869 --ACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCC 229926 ||||| |||| ||||||||| |||||||||||| |||| | ||| ||||| | ||| Sbjct 2138653 AGTCTCAACGACGGCGAACGTCACTTCATCAAACACGTCCTCGCTTTCTTCGCTGCATCC 2138594 Query 229927 GATGGTATTGTGATGGAAAATCTGCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGA 229985 || || || || | || ||||| | | || ||| || || || | || Sbjct 2138593 GACGGAATCGTTTTAGAGAATCT-CGCTTCTCGGTTCATGTCCGATGTCCAAGTCTCGGA 2138535 Query 229986 GGCACGGCAATTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAAT 230041 ||| || || || | || ||| | ||| | ||| ||| |||||||| | Sbjct 2138534 GGCGCGTGCTTTCTACGGTTTCCAGATCGCGATTGA--GAA--TATTCATTCTGAGATGT 2138479 Query 230042 ATGCTCTGCTTATCGACGCGCTTATTTC--CGACGAGCAAGAACGGAACGAGCTTTTTGA 230099 || ||| ||| |||| |||| || || | |||| | || | || || Sbjct 2138478 ATAGTCTTCTTCTCGA--TACTTACATCAAAGATAACAAAGAGAGAGACCATCTCTTCCG 2138421 Query 230100 TGCCATTGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGA 230159 || ||||| | || || || || || || ||||||| ||||||| | || Sbjct 2138420 CGCGATTGAGACGATTCCTTGCGTCGCGAAGAAAGCTCAGTGGGCGATGAAATGGATCGA 2138361 Query 230160 ACCTGGTAAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTT 230219 | | | ||||| || || |||| || | | |||||||||||||| | || Sbjct 2138360 CGGATCTCAGACCTTTGCTGAACGAATCGTTGCTTTCGCTTGTGTTGAAGGTATCTTCTT 2138301 Query 230220 TTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGG 230279 ||||| || |||||| ||||||| ||||| ||| ||| | |||||||| | Sbjct 2138300 CTCCGGAAGCTTCTGCTCCATCTTCTGGCTTAAGAAACGAGGACTCATGCCTGGGTTAAC 2138241 Query 230280 TCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAG-CTTA 230338 | | || ||||| || ||| ||| ||||| || | || | ||| ||| | |||| Sbjct 2138240 TTTCTCAAACGAATTGATCTCTCGAGACGAAGGCTTACACTGCGACTTC-GCGTGCCTTA 2138182 Query 230339 TGTATTCAAAGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAG 230398 | || | ||| | | ||||| ||| || || ||| | || | Sbjct 2138181 TCTACACGCTTCTCAAAACGAAGCTTAGCGAAGAGCGCGTGAAGTCGATCGTATGCGACG 2138122 Query 230399 CAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT-ATTGGCATG 230457 | || || | ||| | |||||| | || ||||| |||| || ||| || |||| ||| Sbjct 2138121 CGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCTTG-CGCGTTGGTTGGGATG 2138063 Query 230458 AACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTT 230517 ||| || | ||| | ||||| || || || ||||| || | |||| | ||| ||| Sbjct 2138062 AACCAGGATTTGATGAGTCAGTATATTGAGTTTGTAGCGGATAGGCTTTTGGGTGCGCTT 2138003 Query 230518 GGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTT 230577 || |||| ||| ||||| | || || |||| | ||||| || || |||||| Sbjct 2138002 GGGTACGGGAAGGTGTATGGTGTGACTAATCCTTTTGATTGGATGGAACTTATCTCGCTT 2137943 Query 230578 CAAGGGAAGACCAACTTCTTCGAAAAGCGTGT 230609 ||||||||||| ||||||||||| || || || Sbjct 2137942 CAAGGGAAGACGAACTTCTTCGAGAAACGCGT 2137911 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 11018435 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 11018376 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 11018375 CCCACGGTGGGC 11018364 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 12740941 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 12740882 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 12740881 CCCACGGTGGGC 12740870 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||| ||||||||| Sbjct 4298637 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAAACTTGTGGTCGTAGGTTCGAGC 4298696 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4298697 CCCACGGTGGGC 4298708 >seq7 Length=17303919 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 5789638 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5789697 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5789698 CCCACGGTGGGC 5789709 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 6941976 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6941917 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6941916 CCCACGGTGGGC 6941905 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 6942824 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6942765 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6942764 CCCACGGTGGGC 6942753 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 6964483 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6964542 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6964543 CCCACGGTGGGC 6964554 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 9832863 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9832804 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 9832803 CCCACGGTGGGC 9832792 >seq6 Length=16577294 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 443709 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 443650 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 443649 CCCACGGTGGGC 443638 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4549147 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4549206 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4549207 CCCACGGTGGGC 4549218 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 14157456 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14157515 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 14157516 CCCACGGTGGGC 14157527 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 16531263 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 16531204 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 16531203 CCCACGGTGGGC 16531192 >seq4 Length=14994381 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 13896712 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 13896771 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 13896772 CCCACGGTGGGC 13896783 >seq1 Length=19566579 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 117658 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 117717 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 117718 CCCACGGTGGGC 117729 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 640130 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 640189 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 640190 CCCACGGTGGGC 640201 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 5585873 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5585814 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5585813 CCCACGGTGGGC 5585802 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 7049575 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7049634 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 7049635 CCCACGGTGGGC 7049646 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 16329001 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 16329060 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 16329061 CCCACGGTGGGC 16329072 >seq2 Length=14066726 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/65 (89%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 165258 CCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCACCGGTTCGAACCCG 165317 |||||||||||| | |||||| |||||||| |||||||||||||||||||||||||| Sbjct 546699 CCATAGCTCAGTGG--TAGAGCATTCGACTGCAGATCGAGAGGTCACCGGTTCGAACCCG 546756 Query 165318 GTTGG 165322 ||||| Sbjct 546757 GTTGG 546761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057813523244990