Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq5 147 2e-30 >seq5 Length=13709650 Score = 147 bits (162), Expect = 2e-30 Identities = 492/749 (66%), Gaps = 29/749 (4%) Strand=Plus/Plus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||||||||||| ||||||||| ||||| ||||| || || || | || || ||| | Sbjct 2137897 TTTGGTAATCGCCAACGCGTTTCTCGAAGAAGTTCGTCTTCCCTTGAAGCGAGATAAGTT 2137956 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 |||| |||||||||||||||| | | | | || |||||| || | | | | Sbjct 2137957 CCATCCAATCAAAAGGATTAGTCACACCATACACCTTCCCGTACCCAAGCGCACCCAAAA 2138016 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 |||||||||||||| || ||||| || | ||| || || |||||| || | | || Sbjct 2138017 GCCTATCCGCTACAAACTCAATATACTGACTCATCAAATCCTGGTTCATCCCAACCA-AC 2138075 Query 16854 GTACC-GGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAAT 16911 | | ||||| || || || ||| || | ||| || | ||||| || || Sbjct 2138076 GCGCAAGGAAGCGCGTCGCACACAAACTCCCT-CTCGATCTCCACCGCGTCGC-----AT 2138129 Query 16912 ACTAGCAACT-----CGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACAT 16966 || | | ||| || || ||| | | ||| ||| | | | || || || Sbjct 2138130 ACGATCGACTTCACGCGCTCTTCGCTAAGCTTCGTTTTGAGAAGCGTGTAGATAAGGCAC 2138189 Query 16967 GCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCG 17026 ||||| ||||| ||||| || ||||||| ||| | |||||| || || || ||||| Sbjct 2138190 GCGAAGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAACCCA 2138249 Query 17027 GGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATA 17086 ||||| |||||||||||| | ||| || || | | ||| || || ||||| ||| Sbjct 2138250 GGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATA 2138309 Query 17087 CCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATC 17146 || || || | || || || | | |||||| || | ||| | || || ||| Sbjct 2138310 CCTTCAACACAAGCGAAAGCAACGATTCGTTCAGCAAAGGTCTGAGATCCGT--CG-ATC 2138366 Query 17147 CATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC-CTTAA- 17204 |||||| | |||||| ||||| | | | |||| ||||| || || || | || Sbjct 2138367 CATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTCTCAATCGCGCGGAAG 2138426 Query 17205 --ATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACAT 17262 || | ||||| || ||| || | || || ||||||| || || || ||||| Sbjct 2138427 AGATGGTCTCTCTCTT---TGT-TATCTTTGATGTAAGTATCGAGAAGAAGACTATACAT 2138482 Query 17263 TTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTA 17321 || || || || ||||| || || ||||| || ||||| |||||| || || |||| | Sbjct 2138483 CTCAGAATGAATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCA-CGCGCCTCCGAGA 2138541 Query 17322 TTTGAACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCG 17380 ||| || || || | ||| || || ||||| || ||||| |||||| || Sbjct 2138542 CTTGGACATCGGACAT-GAACCGAGAAGCGAGATTCTCTAAAACGATTCCGTCGGATGCA 2138600 Query 17381 GCGAAAAACGCCAATATATGCTTAATGAA 17409 ||||| || || | | || || ||||| Sbjct 2138601 GCGAAGAAAGCGAGGACGTGTTTGATGAA 2138629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517540599215640