Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq5 131 2e-25 >seq5 Length=13709650 Score = 131 bits (144), Expect = 2e-25 Identities = 491/751 (65%), Gaps = 33/751 (4%) Strand=Plus/Plus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||||||||| | ||||||||| ||||||||||| || || || | | || ||| || Sbjct 2137897 TTTGGTAATCGCCAACGCGTTTCTCGAAGAAGTTCGTCTTCCCTTGAAGCGAGATAAGTT 2137956 Query 15972 CCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTA 16031 |||| ||||||| |||||||| | | | | ||| |||||| || || | | | Sbjct 2137957 CCATCCAATCAAAAGGATTAGTCACACCATACACCTTCCCGTACCCAAG---CGCACCCA 2138013 Query 16032 AT---CTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT-A 16087 | ||||| |||||||| || ||||| |||| ||| || || || || || | | Sbjct 2138014 AAAGCCTATCCGCTACAAACTCAATATACTGACTCATCAAATCCTGGTTCATCCCAACCA 2138073 Query 16088 AGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATG 16147 | || | ||||| || | | ||| | || ||| | ||||| || | | Sbjct 2138074 ACGCGCAA-GGAAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTCGCATACG 2138132 Query 16148 ATA----TCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAG-GTGTTTAAACATTAGAC 16202 || || |||| | | || | || | | || |||| | || || | Sbjct 2138133 ATCGACTTCACGCGCTCTTCGCTAAG-CTTCGTTTTGAGAAGCGTGT----AGATAAGGC 2138187 Query 16203 ACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACC 16262 ||||||||||||| |||| |||||||||| ||| | |||||| || |||||||||| Sbjct 2138188 ACGCGAAGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAACC 2138247 Query 16263 CTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGAAT 16321 | ||||| |||||||||||| | |||||| || | |||| || || || ||||| Sbjct 2138248 CAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGAT-GGAGCAGAAGCTTCCGGAGAAGAAG 2138306 Query 16322 ATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGT---AGCATCTTTATTA 16378 ||||| |||||| | || ||||| | | |||||| || | || || ||| | Sbjct 2138307 ATACCTTCAACACAAGCGAAAGCAACGATTCGTTCAGCAAAGGTCTGAG-ATCCGT---- 2138361 Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438 || ||||||||| |||| | ||||| | | ||| ||||| || || || Sbjct 2138362 CG-ATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTCTCAATCGCG 2138420 Query 16439 TTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTAC 16498 || | | ||| | || | |||| | || || ||||| | || | ||| ||| Sbjct 2138421 CGGAAGAGATGGTCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGAAGAAGACTATAC 2138480 Query 16499 ATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAG-AAGCATCGAGCCTCCGC 16557 || || || || || ||||| || || ||||| || || ||| ||||| || ||||||| Sbjct 2138481 ATCTCAGAATGAATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCA-CGCGCCTCCGA 2138539 Query 16558 TATTTGTACTTC-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTG 16616 | ||| || || || | || || || || ||||| ||||| ||||| || Sbjct 2138540 GACTTGGACATCGGACAT-GAACCGAGAAGCGAGATTCTCTAAAACGATTCCGTCGGATG 2138598 Query 16617 CAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 |||| || || || | | ||| || ||||| Sbjct 2138599 CAGCGAAGAAAGCGAGGACGTGTTTGATGAA 2138629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511409458458360