Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq3 132 3e-26 seq7 84.2 2e-11 >seq3 Length=15040190 Score = 132 bits (146), Expect = 3e-26 Identities = 117/146 (80%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767 |||||||| |||||| ||||||||| || ||||| || ||||| |||||||||| | Sbjct 12702082 TGAGCATCCCCTATAACATGGATAAAATCACCAGGAACGAGATTGCACACATGAGCAAGC 12702141 Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 |||||||| | |||||| ||| |||||||||||| ||||| || | ||||| || ||| Sbjct 12702142 ATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCCCATGTCTGCT 12702201 Query 101828 GATCTTTGATACAGTTGACAGGAAAG 101853 || | |||||||| |||||| || || Sbjct 12702202 GAACGTTGATACATTTGACACGAGAG 12702227 >seq7 Length=17303919 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 101755 GACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAA 101814 ||| ||||| | ||||| || | |||||| || |||||||||||||| || || | Sbjct 2150037 GACGTGAGCCAGAATGCATGTAAGAAGAGAGTATGAGGCAATGTTAAATGGTACACCGAG 2149978 Query 101815 CCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAA 101874 |||||||| ||||| | ||||||| |||||| ||||| | ||||| |||||||| Sbjct 2149977 ACCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTTGCAACATAAAA 2149918 Query 101875 TTGA 101878 ||| Sbjct 2149917 CTGA 2149914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361247796675023