Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq6 125 6e-24 seq7 122 7e-23 seq1 118 9e-22 seq5 109 5e-19 seq2 104 2e-17 seq4 96.9 3e-15 >seq6 Length=16577294 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||||| ||| | |||||||| || || ||||| ||||| || Sbjct 735337 CCACCTCTCAGACGAAGCACCAAATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCT 735396 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||| ||||| || || ||| | ||||| ||||| |||||| || Sbjct 735397 AGTGTACGGCCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGAGGG 735456 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||||||| || || | | ||| ||| ||| | ||| Sbjct 735457 ATACCTTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATAGTGTCAGAGCTCTCAACC 735516 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||||||||| | || |||||||| || ||||| Sbjct 735517 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 735563 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || ||||||||||| ||||| ||||| |||| |||| | ||||||||| ||| || || Sbjct 14990581 GTAGACTCCTTTTGGATGTTGTAGTCAGCCAAGGTTCTGCCGTCCTCCAACTGCTTTCCA 14990522 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || | |||||||||||| || | || || ||||| |||||| ||| Sbjct 14990521 GCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCTTTGTCCTGGATCTTGGCCTTC 14990462 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| || ||| |||| |||| ||| || ||||| ||||| ||||| Sbjct 14990461 ACGTTGTCGATGGTGTCAGAACTCTCCACCTCCAAGGTGATAGTCTTCCCGGTCAACGTC 14990402 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| |||||||| Sbjct 14990401 TTGACAAAGATTTGCAT 14990385 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || || ||| |||| || | || |||||||| || ||||| || || ||| Sbjct 735565 CCACCTCTCAACCGGAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGCC 735624 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| || | || || |||||||| || || | || | ||||||||| ||| || Sbjct 735625 AAGGTACGGCCATCTTCGAGCTGTTTACCAGCGAAGATTAATCTCTGCTGATCCGGAGGA 735684 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||||||| ||||| | | ||| || || | ||| Sbjct 735685 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTGTCGATGGTGTCTGAGCTCTCGACC 735744 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| |||| ||||| ||||| |||||||| Sbjct 735745 TCGAGAGTGATGGTCTTGCCAGTTAGTGTTTTCACAAAAATTTGCAT 735791 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | || ||||||||||| ||||| ||||| ||| Sbjct 14991295 CCACCACGGAGACGGAGGACGAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCC 14991236 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | ||||| ||||||||||| || | || || | |||||||||| || Sbjct 14991235 AAAGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 14991176 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| ||||| | | | | || || | |||| | Sbjct 14991175 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCGGAGCTCTCCACT 14991116 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||| ||||| || || |||||||| || ||||| Sbjct 14991115 TCCAGTGTGATGGTCTTCCCGGTCAAGGTCTTGACAAAGATCTGCAT 14991069 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | || |||||||| || ||||| || ||||| ||||| | | || Sbjct 735124 AGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCCGCTAGGGTGCGTCCATCT 735183 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| || || || | || |||||||||||||| || | ||||||||||| Sbjct 735184 TCGAGCTGCTTCCCAGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCC 735243 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| ||| || | | ||| || ||| | |||| |||| || |||||| Sbjct 735244 TGAATCTTGGCTTTGACGTTGTCGATTGTGTCAGAGCTCTCCACCTCCAAAGTGATGGTC 735303 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||||| || |||||||| || ||||| Sbjct 735304 TTGCCGGTTAGGGTCTTGACAAAAATCTGCAT 735335 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| || | ||| | || |||||||| || ||||| ||||| ||| Sbjct 2562838 CCACCACGGAGCCTGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 2562897 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | ||||| ||||||||||| || | || || |||||||||||| || Sbjct 2562898 AATGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGAGGG 2562957 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| ||||| | | | || || | ||| Sbjct 2562958 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTATCAATGGTGTCTGAGCTCTCAACC 2563017 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| || ||||||||||| | || |||||||| || ||||| Sbjct 2563018 TCCAAGGTTATTGTCTTGCCGGTGAGAGTCTTGACAAAAATCTGCAT 2563064 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| || | ||| | ||||||||||| || ||||| || || || Sbjct 14990383 CCTCCACGAAGCCTGAGAACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGCA 14990324 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| | ||||||| || || || || || | || | |||||||||||| || Sbjct 14990323 AGGGTTCTGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 14990264 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||| || | | ||| || ||| |||| Sbjct 14990263 ATACCCTCCTTGTCTTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAACTCTCCACC 14990204 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||| ||||| ||||||| |||||||| || || ||||| Sbjct 14990203 TCGAGAGTAATCGTCTTTCCGGTTAGGGTTTTGACGAAAATCTGCAT 14990157 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| |||| || | ||||| ||||| |||||||| ||||| ||| Sbjct 2563522 CCACCACGAAGCCTGAGGACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCC 2563581 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| || | || || ||||| || || ||| | ||||| || ||||| ||| || Sbjct 2563582 AAGGTACGGCCATCTTCGAGCTGCTTTCCGGCAAAGATAAGCCTTTGCTGATCCGGAGGG 2563641 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | | ||| || ||| | ||| Sbjct 2563642 ATACCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATTGTGTCAGAGCTTTCCACC 2563701 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||| ||||| | || || ||||| || ||||| Sbjct 2563702 TCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACAAAGATCTGCAT 2563748 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| || | ||| | || |||||||| || ||||| ||||| ||| Sbjct 2563294 CCACCACGGAGCCTGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 2563353 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | ||||||| || || || || || | || || |||||||||||| ||| Sbjct 2563354 AAAGTCCTGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGG 2563413 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || ||||| || |||||| || || | | ||| || ||| |||| Sbjct 2563414 ATTCCCTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCAGAACTCTCCACC 2563473 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || || ||||| ||||| | ||| ||||| || |||||||| Sbjct 2563474 TCCAAAGTGATAGTCTTTCCGGTCAGCGTCTTGACGAAGATTTGCAT 2563520 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||||| || ||||| ||||| ||||| || || || ||||| | |||| Sbjct 6990213 AGCACGAGATGCAGGGTAGACTCTTTTTGGATGTTGTAATCAGCGAGGGTACGTCCGTCT 6990272 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || |||||||| || ||| | || |||||||||||||| || | ||||||||||| Sbjct 6990273 TCAAGCTGTTTCCCGGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCT 6990332 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | ||| || || | ||| |||| || || ||| Sbjct 6990333 TGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTCTCAACCTCCAAAGTGATAGTC 6990392 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||||| || || ||||| || ||||| Sbjct 6990393 TTGCCGGTTAGGGTCTTTACAAAAATCTGCAT 6990424 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| ||| | |||||||| || || ||||| || || |||| ||| || | || Sbjct 6990896 GAGAACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATC 6990955 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 || |||||||| || || | || | ||| ||||||||| || | |||||||||||| Sbjct 6990956 TTCAAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGAATGCCTTCCTTGTC 6991015 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 ||||||| || || | | ||| || ||| | ||| || | || ||||| Sbjct 6991016 CTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCGACCTCAAGAGTGATGGT 6991075 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| || || | ||||| || || |||||||| Sbjct 6991076 CTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 6991108 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||||| ||| |||| ||| | || ||||| || || ||||| || || ||| Sbjct 8339203 CCACCTCTCAGCCGGAGAACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAATCTGCC 8339144 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| || | || || |||||||| || || | || | ||| ||||| ||| || Sbjct 8339143 AAGGTACGGCCATCTTCTAGCTGTTTACCAGCGAAGATCAATCTTTGCTGATCCGGAGGA 8339084 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | | | | || ||| | ||| Sbjct 8339083 ATGCCTTCCTTGTCCTGGATCTTCGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACC 8339024 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || | ||||| || || |||||||| Sbjct 8339023 TCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 8338977 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | || |||| || | ||| |||||||| || ||||| || || | Sbjct 6989968 TTCCGCCACGAAGACGAAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCTG 6990027 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | || || | | ||||| |||||||| || || | || |||||||||||||| | Sbjct 6990028 CAAGAGTCCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCTGGTG 6990087 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| ||||| ||| || | | | ||| || | ||| Sbjct 6990088 GGATCCCTTCCTTGTCCTGAATCTTGGCTTTAACGTTATCAATAGTGTCTGAGCTCTCAA 6990147 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||||||||| | || || ||||| |||||||| Sbjct 6990148 CCTCCAAAGTGATGGTCTTGCCGGTAAGGGTCTTCACAAAAATTTGCAT 6990196 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | || |||| || | ||| |||||||| || ||||| || || | Sbjct 8339889 TTCCACCACGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCTG 8339830 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 |||| || | | ||||| |||||||| || || | || ||||||||||||||| | Sbjct 8339829 CCAGTGTCCGACCATCCTCAAGCTGTTTTCCAGCGAAGATGAGTCTCTGCTGGTCCGGAG 8339770 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| ||||| || || | | | | || || | ||| Sbjct 8339769 GGATCCCTTCCTTGTCTTGTATCTTGGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCAA 8339710 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || || |||||||| || || || || ||||| |||||||| Sbjct 8339709 CCTCCAACGTGATAGTCTTGCCTGTCAAAGTCTTCACAAAGATTTGCAT 8339661 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | || |||| || | ||| |||||||| || ||||| || |||| Sbjct 734879 TTCCACCACGAAGACGAAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCCG 734938 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | ||||| | | || || ||||| || || || | || |||||||||||||| | Sbjct 734939 CTAGGGTGCGTCCATCTTCGAGCTGCTTCCCAGCGAAGATGAGTCTCTGCTGGTCTGGTG 734998 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| || || ||| || | | ||| || || | ||| Sbjct 734999 GGATCCCTTCCTTGTCCTGAATTTTAGCTTTGACGTTGTCGATTGTGTCTGAGCTCTCAA 735058 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||| ||||| | || || ||||| |||||||| Sbjct 735059 CCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTCACAAAGATTTGCAT 735107 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| || | ||| | || |||||||| || ||||||||||| ||| Sbjct 2563066 CCTCCACGGAGCCTGAGAACAAGATGAAGTGTAGACTCCTTCTGGATGTTATAGTCAGCC 2563125 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | |||| || || || || || || | || | |||||||||||| || Sbjct 2563126 AAAGTCCTGCCGTCTTCAAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGTGGG 2563185 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || ||||| || || || ||| || | | ||| || ||| | |||| Sbjct 2563186 ATTCCCTCCTTATCTTGAATTTTAGCTTTGACATTGTCGATGGTGTCAGAGCTCTCCACC 2563245 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||||| ||||| || || | |||||||| || || ||||| Sbjct 2563246 TCCAAAGTAATAGTCTTTCCAGTAAGGGTTTTGACGAAGATCTGCAT 2563292 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||| ||||| |||| ||| | | ||||||| ||| || || Sbjct 14990809 GTTGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGACCATCCTCCAACTGCTTTCCG 14990750 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || | |||||||||||| || | || || ||||| |||||| ||| Sbjct 14990749 GCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCTTTGTCCTGGATCTTGGCCTTC 14990690 Query 21099 ACCTGGCCGACAGTATCACCGGGC--TCCGTTTCCACGGTAATGGTCTTGCCGGTTAACG 21156 || | | ||| || | ||| || || ||||| ||| || ||||| ||||| | | Sbjct 14990689 ACGTTGTCGATGGTGT--CCGAGCTTTCAACTTCCAAGGTGATTGTCTTTCCGGTGAGAG 14990632 Query 21157 TTTTGACAAATATTTGCAT 21175 |||| || || || ||||| Sbjct 14990631 TTTTCACGAAGATCTGCAT 14990613 >seq7 Length=17303919 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||||| ||| |||||||| || ||||| || ||||| || || | | ||| Sbjct 14231664 AGAACCAAATGCAGAGTTGACTCCTTCTGGATGTTGTAATCCGCAAGTGTCCGACCATCC 14231723 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || || || ||||||||| | ||||||| || |||||| || | ||||||||||| Sbjct 14231724 TCGAGTTGCTTGCCCGCAAAGATAAGTCGTTGTTGGTCCGGAGGGATCCCTTCCTTGTCT 14231783 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||| || | | | | || ||| | ||| ||| | |||||||| Sbjct 14231784 TGGATCTTGGCTTTGACATTGTCAATGGTGTCAGAGCTCTCAACTTCTAGAGTAATGGTT 14231843 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | ||||| |||||||||||||| Sbjct 14231844 TTGCCGGTGAGAGTTTTCACAAATATTTGCAT 14231875 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || ||| || |||| || | || |||||||| ||||| || || || || Sbjct 14232333 CCACCTCTCAACCTAAGAACCAAGTGAAGTGTTGACTCCTTCTGAATATTGTAATCAGCA 14232392 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| | | ||||| || || |||||||||| |||||||| ||||||||| | Sbjct 14232393 AGGGTTCGACCATCCTCGAGTTGCTTGCCCGCATGGATAAGTCTTTGCTGGTCCGGTAGG 14232452 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| ||||||| |||||| || || | | | | || ||| | ||| | Sbjct 14232453 ATTCCTACCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACT 14232512 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||||| |||||||| | ||||| |||||||||||||| Sbjct 14232513 TCTAGAATAATGGTTTTGCCGGTGAGAGTTTTCACAAATATTTGCAT 14232559 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || ||| || |||| || | ||| |||||||| ||||| || || |||||| Sbjct 14232105 CCTCCTCTCAACCTAAGAACCAAGTGTAGAGTTGACTCCTTCTGAATATTGTAATCCGCC 14232164 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || || | ||||| || || || |||||||| ||||||||||||||||||| | Sbjct 14232165 AAAGTACGGCCATCCTCAAGTTGCTTCCCCGCATAGATAAGTCTCTGCTGGTCCAGTAGG 14232224 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | | | || || | || | Sbjct 14232225 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCAATGGTGTCGGAGCTTTCAACT 14232284 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | | ||||||||||| |||| || || ||||| |||||||| Sbjct 14232285 TCAAGAATTATGGTCTTGCCAGTTAGAGTCTTAACAAAGATTTGCAT 14232331 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||| || ||||| |||||| || | ||||| || || ||||| Sbjct 14231451 GTTGACTCCTTCTGGATGTTGTAATCCGCTAGGGTTCGGCCATCCTCGAGTTGCTTGCCA 14231510 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | ||||||||||||||||| | | ||||||||||| |||||| || Sbjct 14231511 GCGAAGATAAGTCTCTGCTGGTCTGGTAGGATCCCTTCCTTGTCTTGGATCTTGGCCTTG 14231570 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | || || | || |||| || ||||| || ||||| | || Sbjct 14231571 ACATTGTCTATTGTGTCTGAGCTTTCAACCTCCAGTGTTATGGTTTTTCCGGTAAGGGTC 14231630 Query 21159 TTGACAAATATTTGCAT 21175 ||||| ||||||||||| Sbjct 14231631 TTGACGAATATTTGCAT 14231647 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||| || || |||| || | ||||||| || ||||| || Sbjct 14231907 GTTGACTCCTTCTGGATGTTGTAATCAGCCAAAGTACGACCGTCCTCGAGTTGTTTACCT 14231966 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| |||||||||||||||||||| | | ||||||||| || |||||| ||| Sbjct 14231967 GCAAAAATAAGTCTCTGCTGGTCCGGAGTGATGCCTTCCTTATCTTGGATCTTCGCCTTC 14232026 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | || ||| || || | || ||||||||||| || | || Sbjct 14232027 ACATTGTCAATCGTGTCAGAACTTTCGACCTCAAGAGTTATGGTCTTGCCCGTAAGGGTC 14232086 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| |||||||| Sbjct 14232087 TTAACAAAGATTTGCAT 14232103 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || ||| || |||| || | ||| |||||||||||||| || ||||| ||| Sbjct 14232561 CCACCTCTCAACCTAAGAACCAAGTGTAGAGTTGACTCCTTTTGAATATTGTAGTCAGCC 14232620 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || || || || ||||| ||| | ||||| |||||||||||| | Sbjct 14232621 AATGTACGACCATCTTCAAGTTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCCGGAGTA 14232680 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || |||||| || || | | | | || ||| | || Sbjct 14232681 ATACCTTCCTTATCTTGGATCTTAGCCTTGACATTGTCAATCGTGTCAGAGCTTTCAACC 14232740 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || |||||||| ||||| | || || ||||| || ||||| Sbjct 14232741 TCAAGAGTTATGGTCTTCCCGGTAAGAGTCTTAACAAAGATCTGCAT 14232787 >seq1 Length=19566579 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | |||||||| ||| | || ||||| || || ||||| ||||| || Sbjct 8289972 CCTCCTCTCAGACGGAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGCG 8289913 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| |||| ||||||||||| || || | || || | |||||||||| || Sbjct 8289912 AGTGTTCTCCCGTCTTCCAGCTGTTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGG 8289853 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| |||||| | | ||| || || | ||| Sbjct 8289852 ATCCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATCGTGTCTGATGACTCTACC 8289793 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | ||| || ||||| || ||||| ||||| ||||| || |||||||| Sbjct 8289792 TCTAGGGTTATTGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCATTTT 8289743 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || ||||| | ||| | || ||||| || || ||||| || || || Sbjct 19037440 CCACCACGGAGTCTCAGCACAAGATGGAGGGTTGACTCTTTCTGGATGTTGTAATCTGCA 19037381 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || || ||||||||||| ||| | || |||||||| ||||| | Sbjct 19037380 AGAGTGCGGCCATCTTCGAGCTGTTTGCCTGCAAAGATGAGTCTCTGTTGGTCTGGTGAT 19037321 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||||||| ||||| | ||| || ||| | ||| | Sbjct 19037320 ATCCCTTCCTTGTCTTGGATCTTTGCCTTCACGTTATCGATCGTGTCAGAGCTCTCAACT 19037261 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||| |||||||| | || ||||| || || ||||| Sbjct 19037260 TCCAAAGTTATGGTTTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 19037214 >seq5 Length=13709650 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| ||| | || || ||||| || ||||| ||||| ||| Sbjct 13270598 CCACCACGGAGACGGAGCACCAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCC 13270539 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || |||| |||||||| || || || | || | | |||||||||| || Sbjct 13270538 AGAGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAATATCAACCGCTGCTGGTCCGGTGGG 13270479 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| |||||| | | ||| || || | |||| Sbjct 13270478 ATCCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATCGTGTCTGACGACTCCACC 13270419 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | ||| |||||||| || |||| ||||| || || || ||||| || Sbjct 13270418 TCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 13270369 >seq2 Length=14066726 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | ||| ||||||||||| ||||| || || || || || | | ||| Sbjct 7053394 AGCACAAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGCAAGTGTGCGACCATCC 7053453 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || | ||| || || ||| | ||||| |||||||| ||| || | ||||||||||| Sbjct 7053454 TCTAACTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGAATCCCTTCCTTGTCC 7053513 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| ||| || | | | | ||||||| | ||| |||| |||||||| Sbjct 7053514 TGAATCTTAGCTTTAACATTGTCAATAGTATCAGAGCTCTCAACCTCCAAAGTAATGGTT 7053573 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || ||||| || ||||| || ||||| Sbjct 7053574 TTTCCTGTCAACGTCTTCACAAAGATCTGCAT 7053605 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| | |||||| |||| || | ||| || ||||| || || || || |||||| Sbjct 7053607 CCACCTCTTAACCTGAGAACCAAGTGGAGAGTTGATTCCTTCTGTATATTGTAATCCGCC 7053666 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | | ||||| |||||||| || ||| | || | ||| ||||| ||| || Sbjct 7053667 AAGGTACGTCCATCCTCAAGCTGTTTACCGGCAAAGATCAATCTTTGCTGATCCGGAGGG 7053726 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | | ||| ||| ||| | ||| Sbjct 7053727 ATCCCTTCCTTGTCCTGAATCTTTGCCTTAACATTGTCGATAGTGTCAGAGCTCTCTACC 7053786 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||||||||||| || | ||||| || || |||||||| Sbjct 7053787 TCAAGAGTAATGGTCTTGCCAGTAAGTGTTTTCACGAAAATTTGCAT 7053833 >seq4 Length=14994381 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||| ||||| || | |||| | ||||||| ||||| || || Sbjct 14616794 GTTGACTCCTTCTGGATGTTGTAGTCGGCTAAGGTTCGTCCGTCCTCGAGCTGCTTTCCG 14616735 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || |||| | || |||||||||| || | ||||||||||| |||||| ||| Sbjct 14616734 GCGAAAATCAATCGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTC 14616675 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| || ||| | ||| || | ||| || ||||| || |||| ||| Sbjct 14616674 ACATTGTCGATGGTGTCAGATGACTCTACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTT 14616615 Query 21159 TTGACAAATATTTGCA--TTTTGAATCTCT 21186 || || || || |||| ||||| ||||| Sbjct 14616614 TTCACGAAGATCTGCATCTTTTGCTTCTCT 14616585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422255221922468