Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq6 82.4 6e-11 >seq6 Length=16577294 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || | || || ||||| ||||||||||| ||| || || || Sbjct 8339205 ATGCAGATCTTTGTGAAGACTTTGACTGGCAAAACCATCACCCTTGAGGTTGAGAGTTCA 8339264 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | ||| || || |||||||| || | || ||||| Sbjct 8339265 GACACTATTGACAATGTTAAGGCTAAGATCCAGGATAAAGAGGGAATCCCACCGGATCAG 8339324 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 || |||||||||||||| || |||||||| || ||| || | || | || ||||||| Sbjct 8339325 CAGAGACTTATCTTTGCCGGTAAACAATTAGAGGATGGTCGCACAC--TTGCGGATTACA 8339382 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGT 25243 |||| || |||||||| || |||||| |||| Sbjct 8339383 ATATCCAGAAGGAATCAACCCTTCACTTGGT 8339413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410792929909022