Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq3 100 2e-16 >seq3 Length=15040190 Score = 100 bits (110), Expect = 2e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 97072 TGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATC 97131 |||||||| |||| | || ||||| || |||||||| | || ||||| || | | Sbjct 12702082 TGAGCATCCCCTATAACATGGATAAAATCACCAGGAACGAGATTGCACACATGAGCAAGC 12702141 Query 97132 ATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCT 97191 || ||||| | ||||| ||| |||||||||||| ||||| || || ||||| || ||| Sbjct 12702142 ATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCCCATGTCTGCT 12702201 Query 97192 GATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTG 97241 || | |||||| | ||||| || || | || || |||||| ||||| Sbjct 12702202 GAACGTTGATACATTTGACACGAGAGTTCCCCTTCTGCCACATAGAACTG 12702251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346780732969610