Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq7 136 6e-27 seq6 134 2e-26 seq2 125 1e-23 seq4 102 1e-16 seq5 98.7 2e-15 seq1 89.7 8e-13 >seq7 Length=17303919 Score = 136 bits (150), Expect = 6e-27 Identities = 177/241 (73%), Gaps = 3/241 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| | || || || || |||||||| || ||| |||| |||| ||| Sbjct 14231875 ATGCAAATATTTGTGAAAACTCTCACCGGCAAAACCATTACTCTAGAAGTTGAGAGCTC- 14231817 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | ||| || || ||||| || ||||| || || || || || Sbjct 14231816 TGACACCATTGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGGATCCCTCCGGACCA 14231757 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | ||||| ||||| || || ||| | |||||| |||| ||| | | ||||| || Sbjct 14231756 ACAACGACTTATCTTTGCGGGCAAGCAACTCGAGGATGGTCGGACACTTGCGGATTACAA 14231697 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATT 124776 || || || || |||||| ||||||||||| | ||| | || ||||| || ||| ||| Sbjct 14231696 CATCCAGAAGGAGTCAACTCTGCATTTGGTTCTTCGTCTTCGTGGTGGCATGCAAATATT 14231637 Query 124777 C 124777 | Sbjct 14231636 C 14231636 Score = 131 bits (144), Expect = 3e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || || || || |||||| | ||| ||||| | Sbjct 14232787 ATGCAGATCTTTGTTAAGACTCTTACCGGGAAGACCATAACTCTTGAGGTTGAAAGCTCT 14232728 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || || |||||||| |||||||| | || || || Sbjct 14232727 GACACGATTGACAATGTCAAGGCTAAGATCCAAGATAAGGAAGGTATTACTCCGGACCAG 14232668 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || |||||||| |||||||| || ||| | || ||| |||| ||||| | || || ||| Sbjct 14232667 CAGAGGCTTATCTTTGCAGGCAAGCAACTTGAAGATGGTCGTACATTGGCTGACTACAAT 14232608 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTT-TTACGTTTACGAGGTGGTAT 124768 |||||||| || |||||| | || |||||| ||| ||| | ||||||| || Sbjct 14232607 ATTCAAAAGGAGTCAACTCTACACTTGGTTCTTAGGTTGA-GAGGTGGCAT 14232558 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || ||||| || |||||| | ||| | ||| | Sbjct 14232103 ATGCAAATCTTTGTTAAGACCCTTACGGGCAAGACCATAACTCTTGAGGTCGAAAGTTCT 14232044 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||| || |||||||| ||||| || | || || || Sbjct 14232043 GACACGATTGACAATGTGAAGGCGAAGATCCAAGATAAGGAAGGCATCACTCCGGACCAG 14231984 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || |||||||||||||| |||||| | ||||| |||| || || | ||||| || Sbjct 14231983 CAGAGACTTATTTTTGCAGGTAAACAACTCGAGGACGGTCGTACTTTGGCTGATTACAAC 14231924 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || ||||| | ||| | || | ||| | || ||||| || Sbjct 14231923 ATCCAGAAGGAGTCAACCCTTCATCTTGTCCTTCGTCTTCGTGGTGGCAT 14231874 Score = 107 bits (118), Expect = 3e-18 Identities = 166/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| | || || || || |||||||| || | | |||| |||| ||| Sbjct 14232559 ATGCAAATATTTGTGAAAACTCTCACCGGCAAAACCATTATTCTAGAAGTTGAGAGC-TC 14232501 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | || || || ||||| || | ||| || | ||| || || Sbjct 14232500 TGACACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGTAGGAATCCTACCGGACCA 14232441 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||| ||||| ||| || || ||| | |||||| ||||||| | | ||||| || Sbjct 14232440 GCAAAGACTTATCCATGCGGGCAAGCAACTCGAGGATGGTCGAACCCTTGCTGATTACAA 14232381 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTT-TTACGTTTACGAGGTGGTAT 124768 |||||| || || ||||| | || |||||| ||| ||| | ||||||| || Sbjct 14232380 TATTCAGAAGGAGTCAACACTTCACTTGGTTCTTAGGTTGA-GAGGTGGCAT 14232330 Score = 93.3 bits (102), Expect = 6e-14 Identities = 170/246 (69%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 205483 GCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTA 205542 |||| |||||||||||||| | ||||||||| ||||| | |||||||||||||||| | Sbjct 2150000 GCAATGTTAAATGGTACACCGAGACCCATATCGGCTGAGCGCTGATACATTTGACATGAA 2149941 Query 205543 AGATATTTATTATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCAT- 205601 || | | ||| | |||| ||| || |||| || || || || | |||| Sbjct 2149940 AGTTCTCCATTTGCA---ACATAAAACTGAGCAAACATGTGGCATGGAGGAAGTGCCATC 2149884 Query 205602 ATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttatt 205661 | ||| | ||| ||| ||||| |||| | ||| || |||| ||||| || || Sbjct 2149883 AACTTC-AGATCAGGAGGGTTCCAAGCTGACATTATGATTCGTCTATCATCAGGATTGTT 2149825 Query 205662 ttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATC 205721 || ||||| || || | || | | |||||||||||||| ||||||| | || Sbjct 2149824 CTTGATTTTGTTAATTACATCTAAGAGCTGATCAAATCCTTGGCCAGTATAATCAGCATG 2149765 Query 205722 CATATC 205727 |||||| Sbjct 2149764 CATATC 2149759 Score = 89.7 bits (98), Expect = 8e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTG-AAGCAAA 124597 ||||||||||| | ||||| || || || ||||| ||||| | ||| ||| |||| | Sbjct 14231647 ATGCAAATATTCGTCAAGACCCTTACCGGAAAAACCATAACACTGGAGGTTGAAAGCTCA 14231588 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| | || || || ||||| || ||||| || | ||| || || Sbjct 14231587 -GACACAATAGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCTACCAGACCA 14231529 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || ||||| || || || || ||| | |||||| | ||||| ||| ||||| || Sbjct 14231528 GCAGAGACTTATCTTCGCTGGCAAGCAACTCGAGGATGGCCGAACCCTAGCGGATTACAA 14231469 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || ||||| | || | || | ||| | || ||||| || Sbjct 14231468 CATCCAGAAGGAGTCAACACTTCACCTAGTGCTGCGTCTTCGTGGTGGGAT 14231418 >seq6 Length=16577294 Score = 134 bits (148), Expect = 2e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || || || ||||| || || ||||| |||| ||| | Sbjct 6990652 ATGCAGATCTTTGTGAAGACTCTCACTGGTAAAACAATCACCCTAGAGGTTGAGAGCTCA 6990593 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| | ||| || || ||||||||||| || || ||||| ||||| Sbjct 6990592 -GATACCATTGACAATGTCAAAGCTAAGATCCAAGATAAAGAGGGAATCCCACCGGATCA 6990534 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| ||||| || || || |||||||| |||| || || | ||||| || Sbjct 6990533 GCAGAGGCTTATCTTTGCCGGTAAGCAGCTAGAGGATGGTCGCACCTTGGCTGATTACAA 6990474 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| || || | |||||||| | ||| | |||||||||| Sbjct 6990473 CATCCAGAAAGAGTCCACCCTCCATTTGGTGCTTCGTCTGAGAGGTGGTAT 6990423 Score = 131 bits (144), Expect = 3e-25 Identities = 174/239 (73%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| | || |||||||| || || | ||| |||| || | Sbjct 8339205 ATGCAGATCTTTGTGAAGACTTTGACTGGCAAAACCATCACCCTTGAGGTTGAGAGTTCA 8339264 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | || || || || |||||||| || || ||||| ||||| Sbjct 8339265 -GACACTATTGACAATGTTAAGGCTAAGATCCAGGATAAAGAGGGAATCCCACCGGATCA 8339323 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || ||||| ||||| || ||||||||||||||| |||| ||| | | ||||| || Sbjct 8339324 GCAGAGACTTATCTTTGCCGGTAAACAATTAGAGGATGGTCGCACACTTGCGGATTACAA 8339383 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||| || || |||||||| | || |||||| | ||| | || |||||||| ||| || Sbjct 8339384 TATCCAGAAGGAATCAACCCTTCACTTGGTTCTTCGTCTCCGTGGTGGTATGCAAATTT 8339442 Score = 87.8 bits (96), Expect = 3e-12 Identities = 161/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 124535 TACA-ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAG 124593 |||| ||||| || ||| | ||||| || || || || ||||| || | ||| | ||| Sbjct 2563753 TACAGATGCAGATCTTTGTTAAGACTCTCACCGGGAAGACTATCACCCTCGAGGTGGAAA 2563694 Query 124594 CAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTG 124653 ||| ||||| || | || || || || || || |||||||| || || | Sbjct 2563693 GCTCTGACACAATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCGG 2563634 Query 124654 ATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATT 124713 |||| ||||||||||| ||||| ||||| || | || ||| | || || || | || | Sbjct 2563633 ATCAGCAAAGGCTTATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGTACCTTGGCTGACT 2563574 Query 124714 ATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || ||||| || ||||| || | || ||||| | | | || |||||||| Sbjct 2563573 ACAACATTCAGAAGGAATCCACCCTCCACTTGGTCCTCAGGCTTCGTGGTGGTAT 2563519 >seq2 Length=14066726 Score = 125 bits (138), Expect = 1e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || ||||| || || |||||| | ||| |||| || | Sbjct 7053149 ATGCAGATTTTTGTGAAGACCCTCACAGGAAAGACCATAACTTTGGAGGTTGAGAGTTCA 7053090 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| |||| | ||| || ||||| ||||| || || || ||||| || || Sbjct 7053089 -GACACAATCGATAATGTCAAAGCTAAGATTCAGGATAAGGAGGGGATCCCACCAGACCA 7053031 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || || || ||||| |||||||| | |||||| |||| ||| | | ||||| || Sbjct 7053030 GCAGAGACTCATCTTTGCTGGAAAACAGCTTGAGGATGGTCGCACACTTGCGGATTACAA 7052971 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| ||| | || | || || ||| | || |||||||| Sbjct 7052970 CATCCAAAAAGAATCTACTCTTCACCTTGTGTTGCGTCTTCGTGGTGGTAT 7052920 >seq4 Length=14994381 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686 |||| || ||||| |||||||||||||||||||||||||| || ||||| || || ||| Sbjct 9870907 TTCAGGACAAAGAGGGTATACCACCTGATCAACAAAGGCTCATCTTTGCTGGTAAGCAAC 9870966 Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGG 124746 | || ||| | ||||| || | ||||| || || || ||||| || ||| | ||| | | Sbjct 9870967 TCGAAGATGGCCGAACCTTGGCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTG 9871026 Query 124747 TTTTACGTTTACGAGGTGGTA 124767 | || | | ||||||||| Sbjct 9871027 TCTTGAGGCTCAGAGGTGGTA 9871047 >seq5 Length=13709650 Score = 98.7 bits (108), Expect = 2e-15 Identities = 164/235 (70%), Gaps = 9/235 (4%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GC--- 124594 ||||| || ||| | || | || |||||||| || ||||| | || | ||| || Sbjct 4166253 ATGCAGATCTTTGTCAAAAGTCTTACAGGCAAGACCGTAACTCTTAAGGTCGAAAGCTCC 4166194 Query 124595 -AAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTG 124653 | ||||| || | || |||| || || || |||||||||||||| || || | || Sbjct 4166193 GACATGATCCA----CAAAGTTAAGGCAAAAGATCCAAGATAAAGAAGGAATCCCTCTTG 4166138 Query 124654 ATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATT 124713 | || ||| | || ||||| || ||||| | |||||| |||| || || | |||| Sbjct 4166137 ACCAGCAACAAATGATCTTTGCCGGTAAACAGCTCGAGGATGGTCGTACCTTGGCTGATT 4166078 Query 124714 ATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | | |||| ||||| |||||| | ||||||||| || || |||||||||| Sbjct 4166077 ACAGCATTCCGAAAGAGTCAACTCTCCATTTGGTTCTAAAGTTGAGAGGTGGTAT 4166023 >seq1 Length=19566579 Score = 89.7 bits (98), Expect = 8e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| ||||| | ||||| || || || ||||| || || |||| | || || | Sbjct 19036986 ATGCAGATATTCGTCAAGACCCTTACCGGTAAAACCATTACCCTAGAAGTCGAGAGTTCA 19037045 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | ||| || |||||||| || ||||| || | ||| || || Sbjct 19037046 -GACACCATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGGATCCAACCAGACCA 19037104 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || || || |||||||| || || | || ||| ||||||| | |||||| || Sbjct 19037105 ACAGAGACTCATATTTGCAGGCAAGCAGCTCGAAGATGGTCGAACGCTTTCAGATTACAA 19037164 Query 124718 TATTCAAAAAGAATCAAC 124735 || || ||||||||||| Sbjct 19037165 CATCCAGAAAGAATCAAC 19037182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755448700406400