Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq6 113 5e-20 seq5 104 3e-17 seq1 96.9 4e-15 seq2 95.1 1e-14 seq4 87.8 2e-12 seq7 86.0 7e-12 seq3 82.4 9e-11 >seq6 Length=16577294 Score = 113 bits (124), Expect = 5e-20 Identities = 147/197 (75%), Gaps = 10/197 (5%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| || || || || | || || |||||||| |||||||| Sbjct 734916 CTCCTTCTGGATGTTGTAATCCGCTAGGGTGCGTCCATCTTCGAGCTGCTTCCCAGCGAA 734975 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||||| ||||||||| | || | | ||||||||| ||| |||| | ||||| || Sbjct 734976 GATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCC-TGAATTTTAGCTTTGA-CG 735033 Query 43111 TCGCC-ACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 43166 | | | | ||||| |||| || || || | |||||||| || || || || ||| Sbjct 735034 TTGTCGATTGTGTCTGAGCTC---TCAACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTC 735090 Query 43167 TTTACAAAGATTTGCAT 43183 || |||||||||||||| Sbjct 735091 TTCACAAAGATTTGCAT 735107 Score = 113 bits (124), Expect = 5e-20 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||| | ||||||||| | ||| ||| || || || ||||| ||||| Sbjct 735337 CCACCTCTCAGACGAAGCACCAAATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCT 735396 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || |||||||||||||| || || || || | ||| ||||| | || Sbjct 735397 AGTGTACGGCCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGAGGG 735456 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 43132 | | ||||||||| ||| ||| |||| ||| | | | ||||| |||| || Sbjct 735457 ATACCTTCCTTGTCCTGGATCTTTGCCTTGA-CGTTGTCGATAGTGTCAGAGCTC---TC 735512 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| |||||||| ||||| || || ||||| |||||||| ||||| Sbjct 735513 AACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 735563 Score = 109 bits (120), Expect = 6e-19 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| |||||||| ||||| ||||||| |||| || |||||||| || ||||| Sbjct 6990689 CTCCTTTTGGATATTGTAGTCAGCAAGAGTCCTTCCGTCTTCAAGCTGCTTGCCCGCGAA 6990748 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||| || | ||||||||| | || | | ||| || || ||| || ||||| | Sbjct 6990749 TATAAGCCTCTGCTGGTCCGGTGGGATTCCCTCTTTATCTTGGATCTTGGCTTTGACATT 6990808 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| |||| || || |||| |||||||||||||| || | ||||| Sbjct 6990809 GTCAATGGTGTCTGAGCTC---TCAACCTCGAGGGTGATGGTTTTGCCAGTCAAGGTCTT 6990865 Query 43169 TACAAAGATTTGCAT 43183 |||||||| ||||| Sbjct 6990866 CACAAAGATCTGCAT 6990880 Score = 105 bits (116), Expect = 8e-18 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| || || | ||||| || | || |||||| || || |||||||||||| Sbjct 735565 CCACCTCTCAACCGGAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGCC 735624 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || | || || ||||| ||||||||||| || | || |||||| || | || Sbjct 735625 AAGGTACGGCCATCTTCGAGCTGTTTACCAGCGAAGATTAATCTCTGCTGATCCGGAGGA 735684 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | || ||||||||| ||| ||| || | | | | ||||| |||| || Sbjct 735685 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTGTCGATGGTGTCTGAGCTC---TCG 735741 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| |||||||| ||||| ||||| || || ||||| |||||||| Sbjct 735742 ACCTCGAGAGTGATGGTCTTGCCAGTTAGTGTTTTCACAAAAATTTGCAT 735791 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| ||||| ||||| | || || ||||| || |||||||| Sbjct 8339852 CTCCTTCTGGATGTTGTAATCTGCCAGTGTCCGACCATCCTCAAGCTGTTTTCCAGCGAA 8339793 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||||| ||||||||| | || | | |||||||| || || |||| ||| Sbjct 8339792 GATGAGTCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCTTGTATCTTGGCCTTGA-CGT 8339734 Query 43112 CGCCACCG-TGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | || | |||| |||| || || || | |||||| || ||||| || | |||| Sbjct 8339733 TGTCAATGGTGTCTGAGCTC---TCAACCTCCAACGTGATAGTCTTGCCTGTCAAAGTCT 8339677 Query 43168 TTACAAAGATTTGCAT 43183 | |||||||||||||| Sbjct 8339676 TCACAAAGATTTGCAT 8339661 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||| ||||| || ||||| || || |||| || |||||||| |||||||| Sbjct 2562646 TCCTTCTGAATGTTGTAGTCTGCCAGTGTGCGACCGTCCTCAAGCTGCTTTCCAGCGAAG 2562705 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| ||||||||||| | || | || ||||| ||| ||| || || | ||| Sbjct 2562706 ATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCA-CGTT 2562764 Query 43113 G-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | | ||||| |||| || || || | |||||||| || || || | |||||| Sbjct 2562765 GTCAATGGTGTCGGAGCTC---TCAACCTCAAGGGTGATGGTCTTCCCGGTCAACGTCTT 2562821 Query 43169 TACAAAGATTTGCAT 43183 ||||| || ||||| Sbjct 2562822 CACAAAAATCTGCAT 2562836 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||| | ||||| || ||| ||||| || ||||||||||| || || || | Sbjct 6990209 ACGAAGCACGAGATGCAGGGTAGACTCTTTTTGGATGTTGTAATCAGCGAGGGTACGTCC 6990268 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || ||||| || || || || ||||||| ||||||||| | || | | ||||| Sbjct 6990269 GTCTTCAAGCTGTTTCCCGGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTT 6990328 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCG 43143 || | ||| | |||| |||| | | | ||||| |||| || || || | | Sbjct 6990329 GT-CTTGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTC---TCAACCTCCAAAG 6990384 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || ||||| ||||| ||||||||||| || ||||| Sbjct 6990385 TGATAGTCTTGCCGGTTAGGGTCTTTACAAAAATCTGCAT 6990424 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || ||||| ||||||| ||| || | || || ||||| || |||||||| Sbjct 14991260 CTCCTTTTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCAAGCTGTTTGCCAGCGAA 14991201 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | | ||||||||| ||| || || | | Sbjct 14991200 GATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACATT 14991141 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| |||| ||||| || | |||||||| || || || | ||||| Sbjct 14991140 GTCAATGGTGTCGGAGCTC---TCCACTTCCAGTGTGATGGTCTTCCCGGTCAAGGTCTT 14991084 Query 43169 TACAAAGATTTGCAT 43183 |||||||| ||||| Sbjct 14991083 GACAAAGATCTGCAT 14991069 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||| | ||||||||| | ||| ||| || || || |||||||||||| Sbjct 6990426 CCACCTCTCAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGCC 6990485 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || | || |||||||||||||| || || || || | |||||| || | || Sbjct 6990486 AAGGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGTGGG 6990545 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | ||| || || ||| || ||||| | | | || || |||| || Sbjct 6990546 ATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATGGTATCTGAGCTC---TCA 6990602 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||| ||||| || || || ||||| |||||||| ||||| Sbjct 6990603 ACCTCTAGGGTGATTGTTTTACCAGTGAGAGTCTTCACAAAGATCTGCAT 6990652 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||||||||| | |||||||| | ||| ||| || || || |||||||| ||| Sbjct 6990882 CCACCTCTTAAACGGAGAACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCGGCC 6990941 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || | || || ||||| ||||| ||||| || | || |||||||| | || Sbjct 6990942 AAGGTGCGGCCATCTTCAAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGA 6991001 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | || ||||||||| ||| ||| || | | | | ||||| |||| || Sbjct 6991002 ATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTC---TCG 6991058 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | |||||||| || || || || || || || || |||||||| Sbjct 6991059 ACCTCAAGAGTGATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 6991108 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||||| ||||| |||| || || ||||| || ||||| Sbjct 2563329 CTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCTGCCGTCCTCGAGTTGCTTTCCGGCGAA 2563388 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || | ||||||||| | || | | |||||| ||| ||| || || | ||| Sbjct 2563389 GATCAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTATCCTGGATCTTGGCCTTAA-CGT 2563447 Query 43112 CGCC-ACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| ||| ||||| || | ||||| || || || || ||||||| Sbjct 2563448 TGTCGATGGTGTCAGAACTC---TCCACCTCCAAAGTGATAGTCTTTCCGGTCAGCGTCT 2563504 Query 43168 TTACAAAGATTTGCAT 43183 | || ||||||||||| Sbjct 2563505 TGACGAAGATTTGCAT 2563520 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | |||||| ||||| || | || ||||||||| || ||||| |||||| Sbjct 14990611 CCTCCACGCAGACGCAAGACCAAGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCC 14990552 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || | |||| || | |||||| ||||| || || | | ||||||||| | || Sbjct 14990551 AAGGTTCTGCCGTCCTCCAACTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGG 14990492 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCG---CTCGATTC 43132 | | ||| |||||| ||| || || | ||| | | | ||||| ||| || Sbjct 14990491 ATACCCTCTTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCAGAACTC---TC 14990436 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || | ||||| || || || || | |||||| |||||||||||||| Sbjct 14990435 CACCTCCAAGGTGATAGTCTTCCCGGTCAACGTCTTGACAAAGATTTGCAT 14990385 Score = 84.2 bits (92), Expect = 3e-11 Identities = 153/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||||||| | || | || |||||| ||||| |||||||| || || || || | Sbjct 8339648 ACGCAACACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCCGCTAGTGTGCGACC 8339589 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || ||||| ||||||||||| ||||||| || ||||| | || | | ||||| Sbjct 8339588 ATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTTTGTTGGTCTGGTGGGATCCCTTCCTT 8339529 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCG 43143 ||| ||| | || | |||| | | | ||||| |||| || || || | | Sbjct 8339528 TTCC-TGAATCTTAGCCTTGACGTTATCAATTGTGTCTGAGCTC---TCAACTTCCAAGG 8339473 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || ||||| || | ||||| ||||| |||||||| Sbjct 8339472 TGATAGTCTTGCCAGTCAAAGTCTTCACAAAAATTTGCAT 8339433 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | || | |||||||| | || ||| || || || |||||||| ||| Sbjct 8339203 CCACCTCTCAGCCGGAGAACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAATCTGCC 8339144 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || | || |||||||| ||||||||||| || | || ||||| || | || Sbjct 8339143 AAGGTACGGCCATCTTCTAGCTGTTTACCAGCGAAGATCAATCTTTGCTGATCCGGAGGA 8339084 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | || ||||||||| ||| || || | | | | ||||| |||| || Sbjct 8339083 ATGCCTTCCTTGTCCTGGATCTTCGCCTTAACATTGTCAATGGTGTCAGAGCTC---TCA 8339027 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| |||||||| ||||| || || || || || || |||||||| Sbjct 8339026 ACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 8338977 >seq5 Length=13709650 Score = 104 bits (114), Expect = 3e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || |||||||| || |||| || |||||||| || |||||| Sbjct 13270562 TCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAAT 13270503 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | ||||||||||| | || | | |||||||| ||| || ||| | | Sbjct 13270502 ATCAACCGCTGCTGGTCCGGTGGGATCCCTTCCTTGTCTTGGATCTTCGCTTTCACATTG 13270443 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||| ||| ||||| || | || ||||| || |||||||| || || || Sbjct 13270442 TCGATCGTGTCTGACGACTCCACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACG 13270383 Query 43173 AAGATTTGCATTTTT 43187 ||||| ||||| ||| Sbjct 13270382 AAGATCTGCATCTTT 13270368 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||| || | || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 9119728 AAAAAATTTCGCCGCTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 9119787 Query 60117 TCACCACTATACTAC 60131 | ||||||||||||| Sbjct 9119788 TTACCACTATACTAC 9119802 >seq1 Length=19566579 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | ||| | ||||||||| | || ||| || || || ||||| || || Sbjct 8289972 CCTCCTCTCAGACGGAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGCG 8289913 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || | | |||| || ||||| || || ||||| || || ||||||||||| | || Sbjct 8289912 AGTGTTCTCCCGTCTTCCAGCTGTTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGG 8289853 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | |||||||| ||| || ||| | | | | |||||| || || || Sbjct 8289852 ATCCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATCGTGTCTGATGACTCTACC 8289793 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 || | || || || || ||||||| || || |||||||| ||||||||| Sbjct 8289792 TCTAGGGTTATTGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCATTTTT 8289742 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/88 (82%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 60044 ATTAACGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGA 60103 |||||| || | |||||| || || | || ||| ||||||||| |||| ||||||||| Sbjct 11299703 ATTAACATTACT-AAAAATAATCGCCGCTGCCGGGGATCGAACCCGGGTCACCCGCGTGA 11299645 Query 60104 CAGGCGGACATACTCACCACTATACTAC 60131 ||||||| ||||| ||||||||||||| Sbjct 11299644 CAGGCGGGAATACTTACCACTATACTAC 11299617 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| || || | || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 6109328 AAAAATAATCGCCGCTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 6109269 Query 60117 TCACCACTATACTAC 60131 | ||||||||||||| Sbjct 6109268 TTACCACTATACTAC 6109254 >seq2 Length=14066726 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||| | ||| | ||| | || ||||||||| || ||||||||||| Sbjct 7053379 CCACCTCTGAGACGAAGCACAAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGCA 7053438 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || |||| |||||||||||| || || || | |||||| || | || Sbjct 7053439 AGTGTGCGACCATCCTCTAACTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGA 7053498 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 43132 | | ||||||||| ||| | || | || | | | | | | || || |||| || Sbjct 7053499 ATCCCTTCCTTGTCC-TGAATCTTAGCTTTAACATTGTCAATAGTATCAGAGCTC---TC 7053554 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | || |||||||| || || | |||||| |||||||| ||||| Sbjct 7053555 AACCTCCAAAGTAATGGTTTTTCCTGTCAACGTCTTCACAAAGATCTGCAT 7053605 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| || || |||||||||| |||||| | || || ||||| || ||||| || Sbjct 7052731 TCCTTTTGGATGTTATAATCAGCCAAAGTCCGACCATCCTCAAGCTGTTTCCCAGCAAAG 7052790 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 43111 ||||||| ||||||||| | || | | ||| |||||| ||| | || | |||| | Sbjct 7052791 ATGAGTCTCTGCTGGTCTGGTGGGATCCCCTCTTTGTCC-TGAATCTTAGCCTTGACGTT 7052849 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| |||| || || || | || || || || || || | || || Sbjct 7052850 ATCAATTGTGTCTGAGCTC---TCAACCTCCAAGGTAATAGTCTTACCTGTCAATGTTTT 7052906 Query 43169 TACAAAGATTTGCAT 43183 |||||||||||||| Sbjct 7052907 CACAAAGATTTGCAT 7052921 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || ||||||||||| || || || | || || ||||| || ||||| || Sbjct 7053186 CTCCTTTTGGATGTTGTAATCAGCAAGGGTGCGACCATCTTCAAGCTGTTTCCCAGCAAA 7053245 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||||| ||| ||||| | || | | ||||||||| ||| | || | |||| Sbjct 7053246 GATGAGTCTCTGTTGGTCTGGTGGGATTCCTTCCTTGTCC-TGAATCTTAGCCTTGACGT 7053304 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| || || || | || ||||| || || || || |||| Sbjct 7053305 TATCAATTGTGTCTGAGCTC---TCAACCTCCAAAGTTATGGTCTTTCCGGTAAGGGTCT 7053361 Query 43168 TTACAAAGATTTGCAT 43183 | ||||| || ||||| Sbjct 7053362 TCACAAAAATCTGCAT 7053377 >seq4 Length=14994381 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || | || || |||| || |||||||| || ||||| Sbjct 14616789 CTCCTTCTGGATGTTGTAGTCGGCTAAGGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAA 14616730 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | |||||||||||| | ||| | | ||||||||| ||| || || | | Sbjct 14616729 AATCAATCGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATT 14616670 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| || || || |||| ||||| || || |||||||| || || || Sbjct 14616669 GTCGATGGTGTCAGATGACTCTACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCAC 14616610 Query 43172 AAAGATTTGCATTTTT 43187 ||||| ||||| ||| Sbjct 14616609 GAAGATCTGCATCTTT 14616594 >seq7 Length=17303919 Score = 86.0 bits (94), Expect = 7e-12 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||||| || |||||| || || |||||||| || || ||||| | || || Sbjct 14231667 ACCAAATGCAGAGTTGACTCCTTCTGGATGTTGTAATCCGCAAGTGTCCGACCATCCTCG 14231726 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || ||||| || || || || ||||| || ||||| | || | | |||||||| | Sbjct 14231727 AGTTGCTTGCCCGCAAAGATAAGTCGTTGTTGGTCCGGAGGGATCCCTTCCTTGTCTTGG 14231786 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTT 43151 || || ||||| | | | ||||| |||| || || || | || |||||| Sbjct 14231787 ATCTTGGCTTTGACATTGTCAATGGTGTCAGAGCTC---TCAACTTCTAGAGTAATGGTT 14231843 Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || || || || ||||| |||||||| Sbjct 14231844 TTGCCGGTGAGAGTTTTCACAAATATTTGCAT 14231875 >seq3 Length=15040190 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||| || | || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 4403104 AAAAAAATTCGCCGCTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 4403045 Query 60117 TCACCACTATACTAC 60131 | ||||||||||||| Sbjct 4403044 TTACCACTATACTAC 4403030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571812074812440