Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 2e-14 seq2 86.0 9e-12 seq5 84.2 3e-11 >seq6 Length=16577294 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | | |||||||| | || || ||||| || || ||||||| Sbjct 8339203 CCACCTCTCAGCCGGAGAACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAATCTGCC 8339144 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | || ||| |||| ||||| ||||| || |||||||||||||||||||||||| Sbjct 8339143 AAGGTACGGCCATCTTCTAGCTGTTTACCAGCGAAGATCAATCTTTGCTGATCCGGAGGA 8339084 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || || || Sbjct 8339083 ATGCCTTCCTTGTCCTG 8339067 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | || ||||| || ||||| ||||| | ||| || | | ||| ||| Sbjct 8339413 ACCAAGTGAAGGGTTGATTCCTTCTGGATATTGTAATCCGCAAGTGTGCGACCATCCTCT 8339354 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| || ||||| || | ||| ||||||||||| || ||||| |||||||| || Sbjct 8339353 AATTGTTTACCGGCAAAGATAAGTCTCTGCTGATCCGGTGGGATTCCCTCTTTATCCTG 8339295 >seq2 Length=14066726 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | || | ||||| || | ||| ||||| || |||||| ||||| | Sbjct 7053607 CCACCTCTTAACCTGAGAACCAAGTGGAGAGTTGATTCCTTCTGTATATTGTAATCCGCC 7053666 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| || | ||||| || ||||| ||||||||||||||||||||||| Sbjct 7053667 AAGGTACGTCCATCCTCAAGCTGTTTACCGGCAAAGATCAATCTTTGCTGATCCGGAGGG 7053726 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || || || Sbjct 7053727 ATCCCTTCCTTGTCCTG 7053743 >seq5 Length=13709650 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 10435 AAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTATTGATA 10494 ||||| || |||||| ||||||| ||||||| ||| ||| || | | || ||| Sbjct 7382290 AAGGAACATACGCAAGAATAGCTCCGAGATCTGGTTTGGCTTGGAAACATTCGATCGATG 7382231 Query 10495 TTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATC 10554 |||||||||| || ||||| | ||||| |||||| || || || || || ||||||| Sbjct 7382230 TTGGAGCTGGTGTGATTGATGCTGATTACAGAGGACCCGTTGGTGTGATTTTGTTTAATC 7382171 Query 10555 ATTCTAATG 10563 ||||| ||| Sbjct 7382170 ATTCTGATG 7382162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743519215676160