Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq7 102 7e-17 >seq7 Length=17303919 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 20288 ATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGAACC 20347 ||||| ||| |||||| | ||||| | | |||| ||||| ||| || | || | Sbjct 2149772 ATTATACTGGCCAAGGATTTGATCAGCTCTTAGATGTAATTAACAAAATCAAGAACAATC 2149831 Query 20348 CAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCTT 20407 | | || ||| |||| || | | || |||||| || ||| || || ||||| Sbjct 2149832 CTGATGATAGACGAATCATAATGTCAGCTTGGAACCCTCCTGATCTGAAGTTGATGGCAC 2149891 Query 20408 TGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAA 20466 | |||||||| || ||| | ||| || ||||| ||||| ||| ||| | || |||||| Sbjct 2149892 TTCCTCCATGCCACATGTT-TGCTCAGTTTTATGTTGCAAATGGAGAACTTTCATGTCAA 2149950 Query 20467 ATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGC 20516 |||||||| || || || |||||||| || ||||| || || || ||||| Sbjct 2149951 ATGTATCAGCGCTCAGCCGATATGGGTCTCGGTGTACCATTTAACATTGC 2150000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399180239312485