Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq7 87.8 4e-12 >seq7 Length=17303919 Score = 87.8 bits (96), Expect = 4e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 ||||| || || |||| ||||| || |||||||| || | ||| |||||| | ||| | Sbjct 446028 GATTTTGAATATGATTACTTTGGATTTAAAACGCTTGAAAGATCATATCTCTTAAAAGTA 446087 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | ||||| | || ||| | ||| |||||| ||||| | || |||| || || ||| Sbjct 446088 CAAGGCAAAGTGGTTGAAAGGCCTCAACACATGCTGATGAGGGTTTCTGTTGGCATCCAC 446147 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACA 248988 |||||||| || || || || | |||||| |||| | | || ||| | || Sbjct 446148 AAGGATGATATTGATTCCGCAATCAATACGTACCATTTAATGTCTCAGCGATGGTTCACT 446207 Query 248989 CATGCCACACCGACGCTCTTCAA 249011 ||||| | || || |||||||| Sbjct 446208 CATGCATCTCCTACTCTCTTCAA 446230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073755765350464