Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq6 118 8e-22 seq5 104 2e-17 >seq6 Length=16577294 Score = 118 bits (130), Expect = 8e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45122 CTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG 45181 |||| |||||||| || || ||||||||| ||||||||||| || |||| | Sbjct 14991055 CTTAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGACCA 14990996 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || || || |||||||| ||||| || | ||||| ||||| ||||| | ||| ||||| Sbjct 14990995 TCCTCAAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATACCTTCCTTA 14990936 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| || || ||| || | | | |||| || ||||||||||| ||| || Sbjct 14990935 TCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCAGAACTCTCCACCTCCAAGGTGATA 14990876 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || |||| ||||| |||||||| ||||| Sbjct 14990875 GTCTTCCCGGTCAAGGTCTTGACAAAGATCTGCAT 14990841 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| |||||||| || |||| ||| | || || Sbjct 8339869 ACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCTGCCAGTGTCCGACCATCCTCA 8339810 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || |||||||| ||||| || | | ||| ||||| ||||| | || |||||||| Sbjct 8339809 AGCTGTTTTCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCTTGT 8339750 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| ||||||| || || |||||| Sbjct 8339749 ATCTTGGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCAACCTCCAACGTGATAGTCTTG 8339690 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||||||||||||||||||| Sbjct 8339689 CCTGTCAAAGTCTTCACAAAGATTTGCAT 8339661 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGT 45182 || |||||||| || || |||||| || ||||||||||| || ||| | ||| Sbjct 14990596 AAGACCAAGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCCAAGGTT--CTGCCGT 14990539 Query 45183 CGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGT 45242 | |||| || ||||| || || ||||||| ||| ||||| || || | |||||| |||| Sbjct 14990538 CCTCCAACTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCTTTGT 14990479 Query 45243 CCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCG 45302 || || || ||| || | | | |||| || ||||||||||| ||| || | Sbjct 14990478 CCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGAACTCTCCACCTCCAAGGTGATAG 14990419 Query 45303 TCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || |||| ||||| |||||||||||||| Sbjct 14990418 TCTTCCCGGTCAACGTCTTGACAAAGATTTGCAT 14990385 Score = 109 bits (120), Expect = 4e-19 Identities = 152/209 (73%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| |||||||| ||| || | |||| || | Sbjct 14990364 CAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGCAAGGGTTCTGCCGTCCTCGA 14990305 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 |||| ||||||||||| ||||||| ||| ||||| ||||| | |||||||||||| | Sbjct 14990304 GTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCCTCCTTGTCTTGGA 14990245 Query 45249 TTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 | || |||| | || | | | | |||| || ||||||||| | ||||||||||| Sbjct 14990244 -TCTTGGCTTTAACGTTGTCGATGGTGTCAGAACTCTCCACCTCGAGAGTAATCGTCTTT 14990186 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || || || || || ||||| Sbjct 14990185 CCGGTTAGGGTTTTGACGAAAATCTGCAT 14990157 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| | | ||||| || || ||| ||| ||||| ||||||||||| Sbjct 735337 CCACCTCTCAGACGAAGCACCAAATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCT 735396 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| || | || || || || || ||||| || || | || ||||||||| ||||| Sbjct 735397 AGTGTACGGCCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGAGGG 735456 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| ||||||||| || ||| ||| || | | |||| | ||| ||| Sbjct 735457 ATACCTTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATAGTGTCAGAGCTCTCAACC 735516 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || |||||||| || |||||||| |||||||| ||||| Sbjct 735517 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 735563 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||||||||||||||| |||| |||| |||| || Sbjct 2562628 ACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCTGCCAGTGTGCGACCGTCCTCA 2562687 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| ||||| || | ||||| ||||| ||||| | || ||||| ||| Sbjct 2562688 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTATCCTGG 2562747 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| ||||| | ||| || ||||| Sbjct 2562748 ATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCAACCTCAAGGGTGATGGTCTTC 2562807 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||||||||| || ||||| Sbjct 2562808 CCGGTCAACGTCTTCACAAAAATCTGCAT 2562836 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || | |||| || ||||| ||||||||||| Sbjct 2563329 CTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCTGCCGTCCTCGAGTTGCTTTCCGGCGAA 2563388 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| || ||| ||||| || || | |||||||| ||| || || |||||| Sbjct 2563389 GATCAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTATCCTGGATCTTGGCCTTAACGTT 2563448 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| || ||||||||||| || || ||||| || ||||| ||||| || Sbjct 2563449 GTCGATGGTGTCAGAACTCTCCACCTCCAAAGTGATAGTCTTTCCGGTCAGCGTCTTGAC 2563508 Query 45325 AAAGATTTGCAT 45336 ||||||||||| Sbjct 2563509 GAAGATTTGCAT 2563520 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||||||| |||||||||||| || ||| | || Sbjct 14990824 AAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGACCATCC 14990765 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| || |||||||| || ||||||| ||| ||||| || || | |||||| |||||| Sbjct 14990764 TCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCTTTGTCC 14990705 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || || ||| || | | | ||||| | || || |||| ||| || ||| Sbjct 14990704 TGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGCTTTCAACTTCCAAGGTGATTGTC 14990645 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| ||||| ||||| ||||| Sbjct 14990644 TTTCCGGTGAGAGTTTTCACGAAGATCTGCAT 14990613 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || | |||| | || || || ||||| || ||||| Sbjct 2562873 CTCCTTCTGGATGTTGTAGTCAGCCAATGTGCGACCATCCTCAAGCTGTTTGCCAGCGAA 2562932 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | || ||| ||||| ||||| | || ||||||||| || || ||| || Sbjct 2562933 GATGAGCCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 2562992 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | ||| ||||||| ||| || |||||||| || |||||||| || Sbjct 2562993 ATCAATGGTGTCTGAGCTCTCAACCTCCAAGGTTATTGTCTTGCCGGTGAGAGTCTTGAC 2563052 Query 45325 AAAGATTTGCAT 45336 ||| || ||||| Sbjct 2563053 AAAAATCTGCAT 2563064 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||||||| | | |||||||| || || ||||||||| |||||||| || | Sbjct 735565 CCACCTCTCAACCGGAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGCC 735624 Query 45170 A--GT-TGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226 | || ||| ||| ||| || ||||| || ||||| || || | ||| || || ||| Sbjct 735625 AAGGTACGGCCATCTTCG---AGCTGTTTACCAGCGAAGATTAATCTCTGCTGATCCGGA 735681 Query 45227 GGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCC 45286 || | || ||||||||| || ||| ||| || | | | |||| | ||| Sbjct 735682 GGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTGTCGATGGTGTCTGAGCTCTCG 735741 Query 45287 ACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| | || || |||||||| || || || |||||||| |||||||| Sbjct 735742 ACCTCGAGAGTGATGGTCTTGCCAGTTAGTGTTTTCACAAAAATTTGCAT 735791 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA--GT-TGGCGATCGTCG 45184 |||||||| || ||| |||||||||||||||||||| || || ||| ||| ||| Sbjct 2563540 ACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCCAAGGTACGGCCATCTTCG 2563599 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || |||||||| || || | || || || || ||||| | ||| ||||||||| Sbjct 2563600 ---AGCTGCTTTCCGGCAAAGATAAGCCTTTGCTGATCCGGAGGGATACCTTCCTTGTCC 2563656 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || || |||||| | | |||| | |||||||| | ||| || ||| Sbjct 2563657 TGGATCTTGGCCTTAACGTTGTCGATTGTGTCAGAGCTTTCCACCTCGAGGGTGATAGTC 2563716 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||||||| |||||||| ||||| Sbjct 2563717 TTCCCGGTGAGAGTCTTAACAAAGATCTGCAT 2563748 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||||||||||||||| || ||| |||| | || || || ||||| || ||||| Sbjct 8339624 CTCCTTCTGAATGTTGTAATCCGCTAGTGTGCGACCATCCTCAAGCTGTTTACCAGCGAA 8339565 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | | |||||||| || || | || ||||| ||| ||| || ||| || Sbjct 8339564 GATGAGTCTTTGTTGGTCTGGTGGGATCCCTTCCTTTTCCTGAATCTTAGCCTTGACGTT 8339505 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | |||| | ||| || |||| ||| || |||||||| |||| ||||||||| Sbjct 8339504 ATCAATTGTGTCTGAGCTCTCAACTTCCAAGGTGATAGTCTTGCCAGTCAAAGTCTTCAC 8339445 Query 45325 AAAGATTTGCAT 45336 ||| |||||||| Sbjct 8339444 AAAAATTTGCAT 8339433 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| |||||||| || || ||| | || || Sbjct 6989988 ACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCTGCAAGAGTCCGACCATCCTCA 6990047 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || ||||| || | | ||| ||||| || || | || ||||||||| | Sbjct 6990048 AGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGA 6990107 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| | | |||| | ||| ||||||| || || |||||| Sbjct 6990108 ATCTTGGCTTTAACGTTATCAATAGTGTCTGAGCTCTCAACCTCCAAAGTGATGGTCTTG 6990167 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||||||||| |||||||| Sbjct 6990168 CCGGTAAGGGTCTTCACAAAAATTTGCAT 6990196 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||||| ||||||||||| || || | || ||| Sbjct 14990137 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCCAAGGTACGGCCATCCTCC 14990078 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || ||||||||||| || | || ||| || || || || | |||||||||||| Sbjct 14990077 AACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGG 14990018 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || |||||| | | |||| | |||||||| | ||| || ||||| Sbjct 14990017 ATCTTGGCCTTAACGTTGTCGATTGTGTCAGAGCTTTCCACCTCGAGGGTGATAGTCTTT 14989958 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||||||| || ||||| ||||| Sbjct 14989957 CCGGTGAGAGTCTTAACGAAGATCTGCAT 14989929 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||| || ||||||||||| || |||| | || || || ||||| || ||||| Sbjct 14991260 CTCCTTTTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCAAGCTGTTTGCCAGCGAA 14991201 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| ||||| ||||| | ||| ||||||||| || || ||| || Sbjct 14991200 GATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACATT 14991141 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | |||||| |||| || || ||||| || |||| ||||| || Sbjct 14991140 GTCAATGGTGTCGGAGCTCTCCACTTCCAGTGTGATGGTCTTCCCGGTCAAGGTCTTGAC 14991081 Query 45325 AAAGATTTGCAT 45336 |||||| ||||| Sbjct 14991080 AAAGATCTGCAT 14991069 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| |||||||| || || ||| | || || Sbjct 734899 ACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCCGCTAGGGTGCGTCCATCTTCG 734958 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | | ||| ||||| || || | || ||||||||| | Sbjct 734959 AGCTGCTTCCCAGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGA 735018 Query 45248 ATTTTTTGCTTAACCGCCGCC-ACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||||| |||| || | | | |||| | ||| ||||||| || || ||||| Sbjct 735019 ATTTTA-GCTTTGACGTTGTCGATTGTGTCTGAGCTCTCAACCTCCAAAGTGATGGTCTT 735077 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||||||||||||||||||| Sbjct 735078 TCCGGTGAGGGTCTTCACAAAGATTTGCAT 735107 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||| || ||||| || ||| |||| | || || Sbjct 8339413 ACCAAGTGAAGGGTTGATTCCTTCTGGATATTGTAATCCGCAAGTGTGCGACCATCCTCT 8339354 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | |||||| ||||| || || | | ||| || || || || | ||||| || ||| Sbjct 8339353 AATTGTTTACCGGCAAAGATAAGTCTCTGCTGATCCGGTGGGATTCCCTCTTTATCCTGG 8339294 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || |||||| | | |||| || ||| ||||| | ||| || || ||| Sbjct 8339293 ATCTTAGCCTTAACATTGTCAATAGTGTCTGAACTCTCAACCTCAAGGGTGATGGTTTTG 8339234 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||||||||||||| ||||| Sbjct 8339233 CCAGTCAAAGTCTTCACAAAGATCTGCAT 8339205 >seq5 Length=13709650 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || ||||| |||||||| |||||||||||| ||| ||| |||| ||| Sbjct 13270580 ACCAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGCCGTCTTCC 13270521 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||||||||||||||| ||||| || || | || |||||||| Sbjct 13270520 AGCTGCTTCCCGGCGAATATCAACCGCTGCTGGTCCGGTGGGATCCCTTCCTTGTCTTGG 13270461 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || || || | | |||| ||||||||| | ||| || ||||| Sbjct 13270460 ATCTTCGCTTTCACATTGTCGATCGTGTCTGACGACTCCACCTCTAGGGTTATGGTCTTC 13270401 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||| || || ||||| ||||| ||||| || Sbjct 13270400 CCCGTTAGGGTTTTCACGAAGATCTGCATCTT 13270369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395071478021233