Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq7 104 2e-17 seq6 93.3 3e-14 seq2 86.0 5e-12 seq1 82.4 6e-11 >seq7 Length=17303919 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 18111 CTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAA 18170 ||||| |||| |||||||||||| || || ||||| ||||| || || | ||| || | Sbjct 14232345 CTAAGAACCAAGTGAAGTGTTGACTCCTTCTGAATATTGTAATCAGCAAGGGTTCGACCA 14232404 Query 18171 TCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230 || || | ||| |||||||||| |||||||||||| || ||| | | ||| |||| Sbjct 14232405 TCCTCGAGTTGCTTGCCCGCATGGATAAGTCTTTGCTGGTCCGGTAGGATTCCTACCTTG 14232464 Query 18231 TCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 || || | |||||| | ||| |||||| | ||| ||| | | ||| Sbjct 14232465 TCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACTTCTAGAATAATG 14232524 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||||| | ||||| ||||| |||||||| Sbjct 14232525 GTTTTGCCGGTGAGAGTTTTCACAAATATTTGCAT 14232559 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 18111 CTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAA 18170 ||||| |||| ||| || ||||| || |||||||| |||||||| |||| ||| || | Sbjct 14232573 CTAAGAACCAAGTGTAGAGTTGACTCCTTTTGAATATTGTAGTCAGCCAATGTACGACCA 14232632 Query 18171 TCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230 ||||| | ||| ||||| ||| ||||||| || || || ||| | | ||||||||| Sbjct 14232633 TCTTCAAGTTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCCGGAGTAATACCTTCCTTA 14232692 Query 18231 TCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 || || | |||||| | ||| |||||| | || |||| || ||| Sbjct 14232693 TCTTGGATCTTAGCCTTGACATTGTCAATCGTGTCAGAGCTTTCAACCTCAAGAGTTATG 14232752 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || ||||| | || || ||||| || ||||| Sbjct 14232753 GTCTTCCCGGTAAGAGTCTTAACAAAGATCTGCAT 14232787 >seq6 Length=16577294 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 |||||| ||||| || || ||||||||||| || || | ||| || ||| || | || Sbjct 8339636 GTGAAGGGTTGACTCCTTCTGAATGTTGTAATCCGCTAGTGTGCGACCATCCTCAAGCTG 8339577 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 ||| || || |||| ||||||||||| || || | |||||||| || ||| | Sbjct 8339576 TTTACCAGCGAAGATGAGTCTTTGTTGGTCTGGTGGGATCCCTTCCTTTTCCTGAATCTT 8339517 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 |||||| | ||| ||||| | ||| ||| | |||||| | ||||| || Sbjct 8339516 AGCCTTGACGTTATCAATTGTGTCTGAGCTCTCAACTTCCAAGGTGATAGTCTTGCCAGT 8339457 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 ||| || || |||||||||||||| Sbjct 8339456 CAAAGTCTTCACAAAAATTTGCAT 8339433 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| |||||| || ||||| || |||||||||||||| |||| ||| || || Sbjct 2562625 AGGACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCTGCCAGTGTGCGACCGTCC 2562684 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | || || || || |||| || | || || ||| || | |||||||||||| Sbjct 2562685 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTATCC 2562744 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | ||| ||||| | ||| |||| ||||||| | Sbjct 2562745 TGGATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCAACCTCAAGGGTGATGGTC 2562804 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || |||||||| || || |||||||| ||||| Sbjct 2562805 TTCCCGGTCAACGTCTTCACAAAAATCTGCAT 2562836 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||||| ||||| ||||| || |||||||| || |||| || | |||| Sbjct 8339188 AGAACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAATCTGCCAAGGTACGGCCATCT 8339129 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||||| || || |||| | |||||| |||||| || | ||||||||| || Sbjct 8339128 TCTAGCTGTTTACCAGCGAAGATCAATCTTTGCTGATCCGGAGGAATGCCTTCCTTGTCC 8339069 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | ||| |||||| | ||| || | |||||| | Sbjct 8339068 TGGATCTTCGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTC 8339009 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | |||||| || ||||||||||| Sbjct 8339008 TTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 8338977 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| ||||| || || ||||| || ||||||||||| || | ||| | ||| Sbjct 735351 AAGCACCAAATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCTAGTGTACGGCCATC 735410 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 || | || || || ||| ||||||| || ||||| ||| || | |||||||| || Sbjct 735411 CTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGAGGGATACCTTCCTTGTC 735470 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | | |||||| | | | ||||||| | ||| || | ||||||| | Sbjct 735471 CTGGATCTTTGCCTTGACGTTGTCGATAGTGTCAGAGCTCTCAACCTCGAGGGTGATGGT 735530 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||| | || || ||||| || ||||| Sbjct 735531 CTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 735563 >seq2 Length=14066726 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 18111 CTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAA 18170 || || |||| ||| || |||||||| || || || ||||| || |||| || | | Sbjct 7053619 CTGAGAACCAAGTGGAGAGTTGATTCCTTCTGTATATTGTAATCCGCCAAGGTACGTCCA 7053678 Query 18171 TCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230 || || | ||||| || ||| |||| | |||||| |||||| || | |||||||| Sbjct 7053679 TCCTCAAGCTGTTTACCGGCAAAGATCAATCTTTGCTGATCCGGAGGGATCCCTTCCTTG 7053738 Query 18231 TCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 || ||| | | ||| || | | | ||||||| | ||| |||| || ||| Sbjct 7053739 TCCTGAATCTTTGCCTTAACATTGTCGATAGTGTCAGAGCTCTCTACCTCAAGAGTAATG 7053798 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | ||||| || | |||||| || ||||||||||| Sbjct 7053799 GTCTTGCCAGTAAGTGTTTTCACGAAAATTTGCAT 7053833 >seq1 Length=19566579 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 |||| |||||| | |||||| ||||||||||| || |||||||| || | | ||| | Sbjct 19037203 AGTCGAAGTACAAGGTGAAGGGTTGATTCTTTCTGGATGTTGTAATCTGAAAGCGTTCGA 19037144 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||| | || ||||| ||| | || ||||| ||||| || | | |||||| Sbjct 19037143 CCATCTTCGAGCTGCTTGCCTGCAAATATGAGTCTCTGTTGGTCTGGTTGGATCCCTTCC 19037084 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGTTTCAATGGT 18286 || || ||| | | |||| | | || ||| ||||| |||| ||| | ||| Sbjct 19037083 TTGTCTTGAATCT-TAGCTTTAACATTGTCAATGGTGTCTGAACTCTCGACTTCTAGGGT 19037025 Query 18287 GATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| |||| ||||| | || || || || || ||||| Sbjct 19037024 AATGGTTTTACCGGTAAGGGTCTTGACGAATATCTGCAT 19036986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379340426223885