Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 2e-12 >seq1 Length=19566579 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| ||||||||||| || || || |||||| | || || || || Sbjct 8289746 ATGCAGATCTTTGTGAAAACCTTAACGGGGAAGACAATAACCCTAGAGGTAGAGTCATCA 8289805 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | ||| || | || || | || ||||| | || |||||| Sbjct 8289806 GACACGATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGGATCCCACCGGACCAG 8289865 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || ||| | || | || || ||||| |||||||| | || | ||| |||| | Sbjct 8289866 CAGCGTCTGATCTTCGCCGGGAAACAGCTGGAAGACGGGAGAACACTCGCCGACTACAAC 8289925 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || ||||||||| | ||||||||||| ||| | || || | |||||| Sbjct 8289926 ATCCAGAAAGAGTCGACGCTTCATTTGGTGCTCCGTCTGAGAGGAGGT 8289973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418300059184160