Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq7 136 8e-27 >seq7 Length=17303919 Score = 136 bits (150), Expect = 8e-27 Identities = 151/198 (76%), Gaps = 5/198 (3%) Strand=Plus/Plus Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 |||| ||||| ||||||||| | || || ||| | || ||||| ||| ||||| | Sbjct 2149823 AGAACAATCCTGATGATAGACGAATCATAATGTCAGCTTGGAACCCTCCTGATCTGAAGT 2149882 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636 | ||||| |||||||||||||||||| |||||| |||||||| || ||||||||| | | Sbjct 2149883 TGATGGCACTTCCTCCATGCCACATGTTTGCTCAGTTTTATGTTGCAAATGGAGAACTTT 2149942 Query 35637 CGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 | || || |||||||||| ||| || ||| || | || || || || || ||||| Sbjct 2149943 CATGTCAAATGTATCAGCGCTCAGCCGATATG--GGTCTCGGTGTACCATTTAACATTGC 2150000 Query 35695 ATCATACTCTCTTCTGAC 35712 |||||||||||||| || Sbjct 2150001 CTCATACTCTCTTCTTAC 2150018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989574199098215