Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5 178 2e-39 seq4 95.1 2e-14 seq7 82.4 1e-10 >seq5 Length=13709650 Score = 178 bits (196), Expect = 2e-39 Identities = 406/604 (67%), Gaps = 13/604 (2%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| |||||||| | || ||||||| | || |||||||| || || || | Sbjct 2138187 CACGCGAAGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAAC 2138246 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || || || |||||||| || ||||| ||| |||||| |||||| Sbjct 2138247 CCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAG 2138306 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT--GT- 33758 || ||||| || ||| || |||| | || || || | | ||| || || Sbjct 2138307 ATACCTTCAACACAAGCGAAAGCAACGATTCGTTCAGCAAA----GGTCTGAGATCCGTC 2138362 Query 33759 -ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| || ||||| | || ||||| || ||||| ||||| || || || Sbjct 2138363 GATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTCTCAATCGCGCG 2138422 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 ||||||| || | | || || ||||||| | |||||||||| | |||||||||||| Sbjct 2138423 GAAGAGATGGTCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGAAGAAGACTATACAT 2138482 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 || |||||||| || ||||| || ||||| || ||||||||| | ||||| | | Sbjct 2138483 CTCAGAATGAATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGAC 2138542 Query 33938 CTGCACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTG 33996 || || || | ||| || || || | ||| || || ||||| || || | Sbjct 2138543 TTGGACATC-GGACATGAACCGAGAAGCGAGATTCTCTAAAACGATTCCGTCGGATGCAG 2138601 Query 33997 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGTGTTAGT-TTATTCC 34053 | || || || | || ||||| || || | |||| | | || | | || | || Sbjct 2138602 CGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCGCCGTCGTTGAGACTGTTCTCCC 2138661 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 |||| | | |||| || | ||| |||||||| | ||||| || ||||| || || | Sbjct 2138662 AATCGCGGTTGTCTTGTGAGAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCTT 2138721 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGAT 34173 | || ||||| | |||||| | | || ||||||||||| ||| ||||| | ||| Sbjct 2138722 TCTTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACATACAGAATCTGTCTGGGG 2138781 Query 34174 TTGG 34177 |||| Sbjct 2138782 TTGG 2138785 >seq4 Length=14994381 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| || || | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 294909 TCCTCCTTGGTCGACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 294850 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 ||| ||| | ||||| || || || || | |||| | |||||||||||| || ||| Sbjct 294849 GTTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAACTGA 294790 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| || || || || ||| || | || || ||| | || ||||| || Sbjct 294789 AACACCAATACCGCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 294730 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643 |||||| ||||||||||| ||||| | ||||| ||||| Sbjct 294729 GCCTTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 294688 >seq7 Length=17303919 Score = 82.4 bits (90), Expect = 1e-10 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| || || | || | ||| || | ||| | || | || |||||||| ||||| Sbjct 446571 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACGATACC 446512 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| || || || || || || | |||| | ||||| || || || ||| Sbjct 446511 ATTAGATGCTCCGTTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 446452 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 || ||| || |||||||| ||| || | || || ||| ||||||||||| || Sbjct 446451 TACACCAATACCCCCTGCTGATTTGCTTATAACAGCACACTCTTTCAACGTGTCATATAT 446392 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 || || ||||||||||| ||||| | ||||| |||||| Sbjct 446391 TCCCTCGATGCTATCATCCTTCATGCAGATCAGAAAGCAGCTA 446349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629811514387440