Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq5 113 4e-20 seq7 87.8 2e-12 >seq5 Length=13709650 Score = 113 bits (124), Expect = 4e-20 Identities = 389/594 (65%), Gaps = 17/594 (3%) Strand=Plus/Plus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 ||||| || || || ||||| |||||||||| | || | ||| || || || ||||| Sbjct 2138187 CACGCGAAGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAAC 2138246 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAA-CCAGAAAAGAA 11748 || ||||| | ||||||||| || | ||| || || | |||| | | || || ||||| Sbjct 2138247 CCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGG-AGCAGAAGCTTCCGGAGAAGAA 2138305 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTT-GTTGC-TAGAT 11806 || || || ||| || || || || | || ||| || | || | | | | ||| Sbjct 2138306 GATACCTTCAACACAAGCGAAAGCAACGATTCGTTCAGCAAAGGTCTGAGATCCGTCGAT 2138365 Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTA 11866 |||||| | ||||| | ||||||||| ||||| || || || || ||| Sbjct 2138366 --CCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTCTCAATCGCGCGG 2138423 Query 11867 AATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATT 11926 || | ||| | | ||| | |||||| | | || ||||| | | | ||||||||| Sbjct 2138424 AAGAGATGGTCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGAAGAAGACTATACATC 2138483 Query 11927 TCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC 11986 || ||||||||||| || || || || || || || |||||| || ||||| || Sbjct 2138484 TCAGAATGAATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACT 2138543 Query 11987 TGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGC 12045 || ||||| |||| || | || | |||||| || || || || ||||| Sbjct 2138544 TGGACATCGGACAT-GAACCGAGAAGCGAGATTCTCTAAAACGATTCCGTC---GGATGC 2138599 Query 12046 A---AAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTT--TAGTTAAT-TTATC 12099 | || || || || | ||||| || |||| |||| | | | | | | || || Sbjct 2138600 AGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCGCCGTCGTTGAGACTGTTCTC 2138659 Query 12100 CCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGA 12159 |||||| |||| ||| | ||||||||||||| ||||||| || ||| | | Sbjct 2138660 CCAATCGCGGTTGTCTTGTGAGAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGC 2138719 Query 12160 TTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 || || ||||| | |||||| | | || | || ||||| ||| ||| || Sbjct 2138720 TTTCTTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACATACAGAATCT 2138773 >seq7 Length=17303919 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||| | ||| || || | || || | |||||||||||||| |||||||| | Sbjct 446252 TTGAGCCCTTGGTGTCCCTGAATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTG 446193 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| || || | ||| | ||| |||||| | ||| || || | ||| Sbjct 446192 AGACATTAAATGGTACGTATTGATTGCGGAATCAATATCATCCTTGTGGATGCCAACAGA 446133 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT--ATTATTCTGTTTAAGTAGA 38577 |||||||| ||||| ||||| || ||||| | | ||| || | || |||||| ||| Sbjct 446132 AACCCTCATCAGCATGTGTTGAGGCCTTTCAACCACTTTGCCTTGTACT-TTTAAG-AGA 446075 Query 38578 TACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTA 38633 || ||| |||| | ||||| | |||||| ||| |||| | |||| | ||| || Sbjct 446074 TATGATCTTTCAAGCGTTTTAAATCCAAAGTAATCATATTCAAAATCGCGATCATA 446019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468520272879120