Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5 145 1e-29 seq4 95.1 2e-14 >seq5 Length=13709650 Score = 145 bits (160), Expect = 1e-29 Identities = 394/593 (66%), Gaps = 15/593 (3%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||| |||||||||| || ||||||| | || |||||||| || || || | Sbjct 2138187 CACGCGAAGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAAC 2138246 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 36276 || ||||| || || || || |||||||| || ||||| ||| | | | || || ||||| Sbjct 2138247 CCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGA-GCAGAAGCTTCCGGAGAAGAA 2138305 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT--GT 36334 || ||||| || || || |||| | || || || | | ||| || || Sbjct 2138306 GATACCTTCAACACAAGCGAAAGCAACGATTCGTTCAGCAAA----GGTCTGAGATCCGT 2138361 Query 36335 --ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 36392 ||||| || ||||| | || ||||| || ||||| || ||||| || || Sbjct 2138362 CGATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTCTCAATCGCGC 2138421 Query 36393 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 36452 ||||||| || | | || || ||||||| | || ||||| | | ||||||||||| Sbjct 2138422 GGAAGAGATGGTCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGAAGAAGACTATACA 2138481 Query 36453 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 36512 | || |||||||| || ||||| || || || || ||||||||| | ||||| | | Sbjct 2138482 TCTCAGAATGAATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGA 2138541 Query 36513 TCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 36571 || || || | ||| || || || | ||| || || |||||||| || Sbjct 2138542 CTTGGACATC-GGACATGAACCGAGAAGCGAGATTCTCTAAAACGATTCCGTCGGATGCA 2138600 Query 36572 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG--TTTGGTGTTAGT-TTATTC 36628 || || || || | || ||||| || || | |||| | | || | | || | | Sbjct 2138601 GCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCGCCGTCGTTGAGACTGTTCTCC 2138660 Query 36629 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 36688 ||||| | | |||| || | ||| |||||||| | ||||| || ||||| || || Sbjct 2138661 CAATCGCGGTTGTCTTGTGAGAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCT 2138720 Query 36689 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 36741 || || ||||| | |||||| | | || || ||||| || ||| ||||| Sbjct 2138721 TTCTTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACATACAGAATCT 2138773 >seq4 Length=14994381 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| || || | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 294909 TCCTCCTTGGTCGACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 294850 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 || ||||| ||||| || || || || |||||| |||||||||||||| || ||| Sbjct 294849 GTTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAACTGA 294790 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| || || || || ||| || | || || ||| | || ||||| || Sbjct 294789 AACACCAATACCGCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 294730 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 ||| || || |||||||| ||||| | ||||| ||||| Sbjct 294729 GCCTTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 294688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658166440405320