Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5 181 2e-40 seq7 96.9 5e-15 seq4 95.1 2e-14 >seq5 Length=13709650 Score = 181 bits (200), Expect = 2e-40 Identities = 409/604 (68%), Gaps = 13/604 (2%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| | || ||||||| | || | |||||| || || || | Sbjct 2138187 CACGCGAAGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAAC 2138246 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAA 50078 || ||||| || || || || |||||||| || ||||| ||| | | || || ||||| Sbjct 2138247 CCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGA-GCAGAAGCTTCCGGAGAAGAA 2138305 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAA--CTG-GCGCTGTCATG 50135 ||| ||||| || || || ||||| | || || || | ||| | | ||| Sbjct 2138306 GATACCTTCAACACAAGCGAAAGCAACGATTCGTTCAGCAAAGGTCTGAGATCCGTCG-- 2138363 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 ||||| || ||||| | || ||||| || ||||| ||||| || || || Sbjct 2138364 -ATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTCTCAATCGCGCG 2138422 Query 50196 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 50255 ||||||| || | | || || ||||||| | |||||||||| | |||||||||||| Sbjct 2138423 GAAGAGATGGTCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGAAGAAGACTATACAT 2138482 Query 50256 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 50315 || |||||||| || ||||| || ||||| || ||||||||| | ||||| | | Sbjct 2138483 CTCAGAATGAATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGAC 2138542 Query 50316 CTGCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 50374 || || || | ||| || || ||| | ||| || || |||||||| || | Sbjct 2138543 TTGGACATC-GGACATGAACCGAGAAGCGAGATTCTCTAAAACGATTCCGTCGGATGCAG 2138601 Query 50375 CAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCG--TTGGGTGTTAGT-TTATTCC 50431 | || || || | || ||||| || || || |||| | | || | | || | || Sbjct 2138602 CGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCGCCGTCGTTGAGACTGTTCTCCC 2138661 Query 50432 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 |||| | | |||| || | |||||||||||| | ||||| || ||||| || || | Sbjct 2138662 AATCGCGGTTGTCTTGTGAGAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCTT 2138721 Query 50492 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGAT 50551 | || ||||| | |||||| | | || ||||||||||| ||| ||||| | ||| Sbjct 2138722 TCTTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACATACAGAATCTGTCTGGGG 2138781 Query 50552 TTGG 50555 |||| Sbjct 2138782 TTGG 2138785 >seq7 Length=17303919 Score = 96.9 bits (106), Expect = 5e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | || | ||| || | ||| | || | || |||||||| ||||| Sbjct 446571 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACGATACC 446512 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| |||| || || || || || || |||||| | ||||| || || || ||| Sbjct 446511 ATTAGATGCTCCGTTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 446452 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 || ||| || |||||||| ||| || | || || ||| ||||| ||||| || Sbjct 446451 TACACCAATACCCCCTGCTGATTTGCTTATAACAGCACACTCTTTCAACGTGTCATATAT 446392 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||||| ||||||||||| ||||| | ||||| |||||| Sbjct 446391 TCCCTCGATGCTATCATCCTTCATGCAGATCAGAAAGCAGCTA 446349 >seq4 Length=14994381 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 294909 TCCTCCTTGGTCGACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 294850 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 || ||||| ||||| || || || || |||||| | |||||||||||| || ||| Sbjct 294849 GTTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAACTGA 294790 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || || || || ||| || | || || ||| | || ||||| || Sbjct 294789 AACACCAATACCGCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 294730 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||| || ||||||||||| ||||| | ||||| ||||| Sbjct 294729 GCCTTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 294688 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 79425 GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 79484 ||||||||| || || || | ||||| ||||||||||| ||||||||||| | | | || Sbjct 296234 GAGAATAAATGCATCAGCAAGACCTTGTACACCAATACCAATAGGTCTATGACGCATGTT 296175 Query 79485 AGAAATTTCAGC-TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 79541 ||| ||| || ||| | |||||| ||||| | |||||| || ||||||||||| Sbjct 296174 TGAAGTTTTTGCAGTCT-CCACAGGATAGTAATTCACATCTATTATCTTATTGAGATT 296118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718261859727720