Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5 176 6e-39 >seq5 Length=13709650 Score = 176 bits (194), Expect = 6e-39 Identities = 408/605 (67%), Gaps = 15/605 (2%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| |||||||| | || || |||| | || |||||||| || || || | Sbjct 2138187 CACGCGAAGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAAC 2138246 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 || ||||| || || || || |||||||| || || || ||| | | | || || ||||| Sbjct 2138247 CCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGA-GCAGAAGCTTCCGGAGAAGAA 2138305 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT--GT 42241 ||| ||||| || || || |||| | || || || | | ||| || || Sbjct 2138306 GATACCTTCAACACAAGCGAAAGCAACGATTCGTTCAGCAAA----GGTCTGAGATCCGT 2138361 Query 42242 --ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 42299 ||||| || ||||| | || ||||| || ||||| ||||| || || || Sbjct 2138362 CGATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTCTCAATCGCGC 2138421 Query 42300 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACA 42359 ||||||| || | | || || ||||||| | || ||||||| | ||||||||||| Sbjct 2138422 GGAAGAGATGGTCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGAAGAAGACTATACA 2138481 Query 42360 TTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAA 42419 | || |||||||| || ||||| || ||||| || ||||||||| | ||||| | | Sbjct 2138482 TCTCAGAATGAATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGA 2138541 Query 42420 CCTGTACTTCTGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCT 42478 | || || || | ||| || || ||| | ||| || || |||||||| || Sbjct 2138542 CTTGGACATC-GGACATGAACCGAGAAGCGAGATTCTCTAAAACGATTCCGTCGGATGCA 2138600 Query 42479 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--CGGTGTTAAT-TTATTC 42535 || || || || | || ||||| || || | |||| | || || | | || | | Sbjct 2138601 GCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCGCCGTCGTTGAGACTGTTCTCC 2138660 Query 42536 CAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 ||||| | | |||| || | |||||||||||| | ||||| || |||||||| || Sbjct 2138661 CAATCGCGGTTGTCTTGTGAGAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCT 2138720 Query 42596 TTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGA 42655 || || ||||| | |||||| | | || || |||||||| ||| ||||| | ||| Sbjct 2138721 TTCTTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACATACAGAATCTGTCTGGG 2138780 Query 42656 TTTGG 42660 |||| Sbjct 2138781 GTTGG 2138785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671132715117480