Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq7 95.1 2e-14 seq5 91.5 2e-13 >seq7 Length=17303919 Score = 95.1 bits (104), Expect = 2e-14 Identities = 134/183 (73%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 |||||| |||||| ||||| | ||| |||||| | ||||| ||| | ||| || Sbjct 2149820 TCAAGAACAATCCTGATGATAGACGAATCATAATGTCAGCTTGGAACCCTCCTGATCTGA 2149879 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC-TCGTACGATGGCAA 70302 | |||||||| || || || ||| |||||| |||||||||| | | | |||| | Sbjct 2149880 AGTTGATGGCACTTCCTCCATGCCACATGTTTG-CTCAGTTTTATGTTGCAA-ATGGAGA 2149937 Query 70303 ATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACAT 70362 | | ||||| |||||||||| | ||||| ||||| ||||||||||| |||||||| Sbjct 2149938 ACTTTCATGTCAAATGTATCAGCGCTCAGCCGATATGGGTCTCGGTGTACCATTTAACAT 2149997 Query 70363 TGC 70365 ||| Sbjct 2149998 TGC 2150000 >seq5 Length=13709650 Score = 91.5 bits (100), Expect = 2e-13 Identities = 365/564 (65%), Gaps = 23/564 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||| |||||||| || || | || ||||| ||||| | ||||| || ||||| Sbjct 2138740 ATCTGGGAGATGTACAAGAAAGCCGAAGCATCCTTCTGGACCGCTGAAGAAGTAGATCTC 2138681 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || | ||| ||||||||||| || | | || || || | || || Sbjct 2138680 TCACAAGACAACCGCGATTGGGAGAACAGTCTCAACGACGGCGAACGTCACTTCATCAAA 2138621 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| | | || ||||| || | ||||| |||||||| || ||||| || Sbjct 2138620 CACGTCCTCGCTTTCTTCGCTGCATCCGACGGAATCGTTTTAGAGAATCT-------CGC 2138568 Query 125199 TTCTC---TCAAGA--GTTGACCAT-TC-CAGAGGTGTCGTGCTTT-TACGGATTCCAAA 125250 ||||| ||| | | || ||| || | |||| | |||||||| ||||| ||||| | Sbjct 2138567 TTCTCGGTTCATGTCCGATGTCCAAGTCTCGGAGGCG-CGTGCTTTCTACGGTTTCCAGA 2138509 Query 125251 TCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCG 125310 || ||||||||| | || || || ||||| | || | || | ||||| | Sbjct 2138508 TCGCGATTGAGAATATTCATTCTGAGATGTATAGTCTTCTTCTCGATACTTACATCAAAG 2138449 Query 125311 ATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAA 125370 || || | | || ||||| ||| || || ||| | || | | || | Sbjct 2138448 ATAACAAAGAGAGAGACCATCTCTTCCGCGCGATTGAGACGATTCCTTGCGTCGCGAAGA 2138389 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATG-ACGACAAGTCTTCGTACGCCGACAGACTG 125429 | ||||| |||| ||| |||||||| | | || ||| | | || || | Sbjct 2138388 AAGCTCAGTGGGCGATGAAATGGATCGACGGATCTCAGACCTTTG----CTGAACGAATC 2138333 Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTG 125488 || || ||||| || || || |||||||| || || || || ||| ||||||| || Sbjct 2138332 GTTGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTCTGCT-CCATCTTCTG 2138274 Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548 ||| ||||| || ||||||||||| || | || | ||||| || || |||||||| Sbjct 2138273 GCTTAAGAAACGAGGACTCATGCCTGGGTTAACTTTCTCAAACGAATTGATCTCTCGAGA 2138214 Query 125549 CGAGGGCCTACACTGTGACTTTGC 125572 ||| ||| ||||||| ||||| || Sbjct 2138213 CGAAGGCTTACACTGCGACTTCGC 2138190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741052039515480