Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq6 107 1e-18 seq1 104 2e-17 seq7 98.7 7e-16 seq2 82.4 6e-11 >seq6 Length=16577294 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| || | | ||| ||||| |||||||| ||||| || |||||||||||| Sbjct 6990882 CCACCTCTTAAACGGAGAACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCGGCC 6990941 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||| | ||||| || ||| | ||||| | ||| ||||| ||| Sbjct 6990942 AAGGTGCGGCCATCTTCAAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGA 6991001 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| ||||| || ||||| ||| ||| | || ||||| || | || || Sbjct 6991002 ATGCCTTCCTTGTCCTGGATCTTTGC-CTTAACATTGTCGATGGTGTCAGAGCTCTCGAC 6991060 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||| ||||| || || ||||| || ||||||||||| Sbjct 6991061 CTCAAGAGTGATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 6991108 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 |||||||||| | | ||| ||||||||||| || ||||| || ||||||||||| || Sbjct 8339203 CCACCTCTCAGCCGGAGAACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAATCTGCC 8339144 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | | | ||||||| ||||| |||||| | ||||| | ||| || || || Sbjct 8339143 AAGG-TACGGCCATCTTCTAGCTGTTTACCAGCGAAGATCAATCTTTGCTGATCCGGAGG 8339085 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||| ||||| ||||| || || ||| ||| | || ||||| || | || || Sbjct 8339084 AATGCCTTCCTTGTCCTGGATCTTCGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAAC 8339025 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||| || || || || ||||| || ||||||||||| Sbjct 8339024 CTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 8338977 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 ||||||||||| | | ||| || || ||||| || || || || ||||||||||| || Sbjct 735565 CCACCTCTCAACCGGAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGCC 735624 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | | | ||||| | ||||| |||||| | || || | || || || || Sbjct 735625 AAGG-TACGGCCATCTTCGAGCTGTTTACCAGCGAAGATTAATCTCTGCTGATCCGGAGG 735683 Query 15256 AATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 ||| ||||| ||||| || ||||| ||| ||| | || ||||| || | || | Sbjct 735684 AATGCCTTCCTTGTCCTGGATCTTTGC-CTTCACATTGTCGATGGTGTCTGAGCTCTCGA 735742 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | || ||||| || || || || ||||| |||||||||||||| Sbjct 735743 CCTCGAGAGTGATGGTCTTGCCAGTTAGTGTTTTCACAAAAATTTGCAT 735791 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||||||||| || || || |||||||||||| || |||| |||| || Sbjct 14990366 AACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGCAAGGGTTCTGCCGTCCTC 14990307 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| || || ||| | ||||| | || ||||| || || || || ||||| Sbjct 14990306 GAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCCTCCTTGTCTTG 14990247 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| || || | || ||||| || | | || || || | ||||| || || Sbjct 14990246 GATCTTGGCTTTAACGTTGTCGATGGTGTCAGAACTCTCCACCTCGAGAGTAATCGTCTT 14990187 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| || ||||| |||||| Sbjct 14990186 TCCGGTTAGGGTTTTGACGAAAATCTGCATA 14990156 >seq1 Length=19566579 Score = 104 bits (114), Expect = 2e-17 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| || | || | |||||||| || ||||| || ||||||||||| Sbjct 19037212 CCACCTCTCAGTCGAAGTACAAGGTGAAGGGTTGATTCTTTCTGGATGTTGTAATCTGAA 19037153 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTC-GTTTGG 15255 || ||| | ||||| | || ||||| || |||| | | |||||||| | |||| Sbjct 19037152 AGCGTTCGACCATCTTCGAGCTGCTTGCCTGCAAATATGAGTCTCTGTTGGTCTGGTTGG 19037093 Query 15256 AATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | | ||||| ||||| ||| || ||| || ||| | || ||||| || | | || | Sbjct 19037092 A-TCCCTTCCTTGTCTTGAATCTTAGCT-TTAACATTGTCAATGGTGTCTGAACTCTCGA 19037035 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | |||| ||||||||||||||| || || || || || || || |||||| Sbjct 19037034 CTTCTAGGGTAATGGTTTTACCGGTAAGGGTCTTGACGAATATCTGCATA 19036985 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 |||||||| || || ||||| ||||||||||| ||| | | | || || | ||| Sbjct 19037872 TGAAGGGTTGACTCCTTTTGGATGTTGTAATCTGCAAGAGTGCGACCATCCTCAAGCTGT 19037813 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || |||||| | || | | ||||||||| || || ||||| ||||| || ||| Sbjct 19037812 TTACCAGCGAAGATGAGTCTTTGTTGGTCTGGTGCGATCCCTTCCTTGTCTTGGATCTTT 19037753 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||||||| | || || || || | || || || || || || || || || || Sbjct 19037752 GC-CTTTACATTGTCAATTGTGTCCGAGCTCTCAACTTCCAAAGTTATTGTCTTTCCGGT 19037694 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||||||||| ||||| Sbjct 19037693 AAGGGTCTTTACAAAAATCTGCAT 19037670 >seq7 Length=17303919 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||||||||| || | ||| || ||||| || || || || || || |||||||| Sbjct 14232331 TGCCACCTCTCAACCTAAGAACCAAGTGAAGTGTTGACTCCTTCTGAATATTGTAATCAG 14232390 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || ||| | || || | ||| ||||| || | || | | ||| ||||| | Sbjct 14232391 CAAGGGTTCGACCATCCTCGAGTTGCTTGCCCGCATGGATAAGTCTTTGCTGGTCCGGTA 14232450 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | |||||| | ||||| || ||| ||| ||| | || ||||| || | || | Sbjct 14232451 GGATTCCTACCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAA 14232510 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | |||| |||||||||| || || |||||||| ||||| |||||||| Sbjct 14232511 CTTCTAGAATAATGGTTTTGCCGGTGAGAGTTTTCACAAATATTTGCAT 14232559 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| || || || || || || ||||||||||| || | | | || || Sbjct 14231666 AACCAAATGCAGAGTTGACTCCTTCTGGATGTTGTAATCCGCAAGTGTCCGACCATCCTC 14231725 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| ||||| || | || | ||||||||||| || || ||||| ||||| Sbjct 14231726 GAGTTGCTTGCCCGCAAAGATAAGTCGTTGTTGGTCCGGAGGGATCCCTTCCTTGTCTTG 14231785 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| || ||| | || ||||| || | || || |||| ||||||||||| Sbjct 14231786 GATCTTGGCTTTGACATTGTCAATGGTGTCAGAGCTCTCAACTTCTAGAGTAATGGTTTT 14231845 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||| ||||| |||||||| Sbjct 14231846 GCCGGTGAGAGTTTTCACAAATATTTGCAT 14231875 >seq2 Length=14066726 Score = 82.4 bits (90), Expect = 6e-11 Identities = 167/243 (69%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 |||||||| || || | ||| || || || || || || || ||||| |||||||| || Sbjct 7053607 CCACCTCTTAACCTGAGAACCAAGTGGAGAGTTGATTCCTTCTGTATATTGTAATCCGCC 7053666 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || || | || || | ||||| || || | ||||| | ||| || || || Sbjct 7053667 AAGGTACGTC-CATCCTCAAGCTGTTTACCGGCAAAGATCAATCTTTGCTGATCCGGAGG 7053725 Query 15256 AATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 || ||||| ||||| ||| ||||| ||| ||| | || || || || | |||| Sbjct 7053726 GATCCCTTCCTTGTCCTGAATCTTTGC-CTTAACATTGTCGATAGTGTCAGAGCTCTCTA 7053784 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATA 15374 | || | |||||||| || || || || ||||| || ||||||||||| | ||||| Sbjct 7053785 CCTCAAGAGTAATGGTCTTGCCAGTAAGTGTTTTCACGAAAATTTGCATCTGCAAAAATC 7053844 Query 15375 AAA 15377 ||| Sbjct 7053845 AAA 7053847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362175787932393