Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq2 86.0 5e-12 >seq2 Length=14066726 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||| | ||| || ||||| || ||||| ||||||||||| | | || | ||| || Sbjct 7053396 CACAAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGCAAGTGTGCGACCATCCTC 7053455 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 || || || || ||| | ||||||||||| ||||| || | ||||| ||||| Sbjct 7053456 TAACTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGAATCCCTTCCTTGTCCTG 7053515 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTT 20177 ||| || ||| || | | ||| || ||| || | || |||| |||||||||| Sbjct 7053516 AATCTTAGCTTTAACATTGTCAATAGTATC-AGAGCTCTCAACCTCCAAAGTAATGGTTT 7053574 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | || |||||||| || ||||| || ||||| Sbjct 7053575 TTCCTGTCAACGTCTTCACAAAGATCTGCAT 7053605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419583247095213