Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq3 82.4 7e-11 >seq3 Length=15040190 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209 ||| ||||| |||||||| | || |||||||| ||| ||||||||||| ||||| | Sbjct 8696862 ACAAGCAAAGTCACAGTGGAGCCCCTCATCTCTCGATATAAGCTCGTTTGAGAATGTCAA 8696803 Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCA 13249 |||||||||||| || | || |||| ||| || || ||| Sbjct 8696802 ACCCGGCATAAGACCCCTCTTCTTAAGCCAGAAGATGGCA 8696763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430978339741746