Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq6 163 7e-35 seq5 154 3e-32 seq1 149 1e-30 seq2 140 7e-28 seq7 113 1e-19 seq4 111 4e-19 seq3 84.2 5e-11 >seq6 Length=16577294 Score = 163 bits (180), Expect = 7e-35 Identities = 169/219 (77%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || ||||| | |||||| || ||||| || |||||||||| | ||| || Sbjct 2563075 AGCCTGAGAACAAGATGAAGTGTAGACTCCTTCTGGATGTTATAGTCAGCCAAAGTCCTG 2563134 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 |||||||| ||||| |||||||| || || | ||||| || || || || ||||| || Sbjct 2563135 CCGTCTTCAAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGTGGGATTCCCTCC 2563194 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGT 104520 ||||| ||||| || ||||| ||||| || | ||| || || | || ||||| | || Sbjct 2563195 TTATCTTGAATTTTAGCTTTGACATTGTCGATGGTGTCAG-AGCTCTCCACCTCCAAAGT 2563253 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||||| |||||||| ||||| || || |||||||| Sbjct 2563254 AATAGTCTTTCCAGTAAGGGTTTTGACGAAGATCTGCAT 2563292 Score = 134 bits (148), Expect = 3e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | ||| || | ||| | || || |||||||| || || |||||| Sbjct 735334 ATACCACCTCTCAGACGAAGCACCAAATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCA 735393 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||| || | || || ||||| || || || ||||| || ||||||||||| || ||| Sbjct 735394 GCTAGTGTACGGCCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGA 735453 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || ||||| || ||||| |||||||| || || || || | || || || | || Sbjct 735454 GGGATACCTTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATAGTGTC-AGAGCTCTC 735512 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || || || || ||||| |||||||| Sbjct 735513 AACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 735563 Score = 122 bits (134), Expect = 2e-22 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | ||||| ||||| || || || || |||| || || | ||||| Sbjct 6990212 AAGCACGAGATGCAGGGTAGACTCTTTTTGGATGTTGTAATCAGCGAGGGTACGTCCGTC 6990271 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || ||||| || ||||| || || ||||| || || || || || ||||| || || Sbjct 6990272 TTCAAGCTGTTTCCCGGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTC 6990331 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAG 104525 ||||||||||| || || || || | || || || | || ||||| | || |||| Sbjct 6990332 TTGAATCTTTGCCTTGACGTTATCGATTGTGTC-TGAGCTCTCAACCTCCAAAGTGATAG 6990390 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || || |||||||| |||||||| Sbjct 6990391 TCTTGCCGGTTAGGGTCTTTACAAAAATCTGCAT 6990424 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| ||||| || || | || || | ||| || |||| |||||| || Sbjct 8339401 GTTGATTCCTTCTGGATATTGTAATCCGCAAGTGTGCGACCATCCTCTAATTGTTTACCG 8339342 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || ||||| ||||| || || ||||| ||||||||||| ||||| || || Sbjct 8339341 GCAAAGATAAGTCTCTGCTGATCCGGTGGGATTCCCTCTTTATCCTGGATCTTAGCCTTA 8339282 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || || | || ||||| || || || || || ||||| | || Sbjct 8339281 ACATTGTCAATAGTGTCTGAACTCTCAACCTCAAGGGTGATGGTTTTGCCAGTCAAAGTC 8339222 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 8339221 TTCACAAAGATCTGCAT 8339205 Score = 113 bits (124), Expect = 1e-19 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| | || || | ||| | || || |||||||| || || || || Sbjct 6990879 ATACCACCTCTTAAACGGAGAACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCG 6990938 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | || | || ||||| || ||||| || || || || | || || || || ||| Sbjct 6990939 GCCAAGGTGCGGCCATCTTCAAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGA 6990998 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || ||||| || ||||| |||||||| || ||||| || | ||| || || | || Sbjct 6990999 GGAATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAG-AGCTCTC 6991057 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||||||||| |||||||| || || || ||||| Sbjct 6991058 GACCTCAAGAGTGATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 6991108 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || | || | || || || ||||| || || ||||||| | || | | Sbjct 14991058 AGCCTTAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGA 14990999 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || || ||||||||||| || || || | ||| || || ||||| || ||||| Sbjct 14990998 CCATCCTCAAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATACCTTCC 14990939 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||||||| ||||| || || || || || | ||| || | || ||||| | || Sbjct 14990938 TTATCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCAGAACTCTCCACCTCCAAGGTG 14990879 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || || | || || ||||| |||||||| Sbjct 14990878 ATAGTCTTCCCGGTCAAGGTCTTGACAAAGATCTGCAT 14990841 Score = 107 bits (118), Expect = 4e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || || || | ||||| | ||| || || || ||||| ||| Sbjct 6990000 GTAGACTCCTTCTGGATGTTGTAATCTGCAAGAGTCCGACCATCCTCAAGCTGTTTCCCA 6990059 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || ||||| || || || || || ||||| || ||||||||||| ||||| Sbjct 6990060 GCGAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATCTTGGCTTTA 6990119 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || || || | || ||||| | || || ||||| || ||||| || Sbjct 6990120 ACGTTATCAATAGTGTC-TGAGCTCTCAACCTCCAAAGTGATGGTCTTGCCGGTAAGGGT 6990178 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 6990179 CTTCACAAAAATTTGCAT 6990196 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || || || || || ||||||| | ||||| ||||| || | || |||||| Sbjct 14990581 GTAGACTCCTTTTGGATGTTGTAGTCAGCCAAGGTTCTGCCGTCCTCCAACTGCTTTCCA 14990522 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||| || || || || || || ||||| ||||| ||||| || || Sbjct 14990521 GCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCTTTGTCCTGGATCTTGGCCTTC 14990462 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || | || ||||| | || |||||||| || || | || Sbjct 14990461 ACGTTGTCGATGGTGTCAGAACTCTCCACCTCCAAGGTGATAGTCTTCCCGGTCAACGTC 14990402 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 14990401 TTGACAAAGATTTGCAT 14990385 Score = 102 bits (112), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || || || | ||| || | || ||||| || || || ||| Sbjct 735139 GTAGACTCCTTCTGGATGTTGTAATCCGCTAGGGTGCGTCCATCTTCGAGCTGCTTCCCA 735198 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || ||||| || || || || || ||||| || ||||||||||| ||||| Sbjct 735199 GCGAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATCTTGGCTTTG 735258 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || || || | || ||||| | || || ||||| || || || || Sbjct 735259 ACGTTGTCGATTGTGTC-AGAGCTCTCCACCTCCAAAGTGATGGTCTTGCCGGTTAGGGT 735317 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 735318 CTTGACAAAAATCTGCAT 735335 Score = 98.7 bits (108), Expect = 2e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || || || | ||| || | ||| || || || ||||| ||| Sbjct 8339629 GTTGACTCCTTCTGAATGTTGTAATCCGCTAGTGTGCGACCATCCTCAAGCTGTTTACCA 8339570 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || || ||||| || || || || ||||| || ||||||||||| || || Sbjct 8339569 GCGAAGATGAGTCTTTGTTGGTCTGGTGGGATCCCTTCCTTTTCCTGAATCTTAGCCTTG 8339510 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || || || | || || || | || |||||||| ||||| | || Sbjct 8339509 ACGTTATCAATTGTGTC-TGAGCTCTCAACTTCCAAGGTGATAGTCTTGCCAGTCAAAGT 8339451 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 8339450 CTTCACAAAAATTTGCAT 8339433 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || | || || | ||| || || || ||||||||| Sbjct 8339857 GTCGACTCCTTCTGGATGTTGTAATCTGCCAGTGTCCGACCATCCTCAAGCTGTTTTCCA 8339798 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || ||||| || || ||||| || ||||| || || || ||||| || || Sbjct 8339797 GCGAAGATGAGTCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCTTGTATCTTGGCCTTG 8339738 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| || || | || ||||| | || |||||||| || || | || Sbjct 8339737 ACGTTGTCAATGGTGTC-TGAGCTCTCAACCTCCAACGTGATAGTCTTGCCTGTCAAAGT 8339679 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 8339678 CTTCACAAAGATTTGCAT 8339661 >seq5 Length=13709650 Score = 154 bits (170), Expect = 3e-32 Identities = 246/346 (71%), Gaps = 14/346 (4%) Strand=Plus/Minus Query 268945 TTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAAT 269004 ||| ||||| |||||||| || || || ||||||||||| |||||||| ||||| | | Sbjct 2138525 TTTCTACGGTTTCCAGATCGCGATTGAGAATATTCATTCTGAGATGTATAGTCTTCTTCT 2138466 Query 269005 AGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATGAGA----- 269059 |||||||| || | |||||||| || | |||| || | |||| | || Sbjct 2138465 CGATACTTACATCAAAGATAACAAAGAGAG----AGACCATCT-CTTCCGCGCGATTGAG 2138411 Query 269060 ACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACG-ATAGCGC 269118 || || || || || ||| || | ||||| |||||||||| ||| || | Sbjct 2138410 ACGATTCCTTGCGTCGCGAAGAAAGCTCAGTGGGCGATGAAATGGATCGACGGATCTCAG 2138351 Query 269119 GCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGT- 269177 |||| | ||| | | |||||||| || ||| |||||||| ||||| || || Sbjct 2138350 ACCTTT-GCTGAACGAATCGTTGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGAAG 2138292 Query 269178 CTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTA 269237 ||| ||| | ||||| ||| | |||||| |||| || ||||| || ||||||||||| | Sbjct 2138291 CTTCTGCTCC-ATCTTCTGGCTTAAGAAACGAGGACTCATGCCTGGGTTAACTTTCTCAA 2138233 Query 269238 ACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTG 269283 |||||||||| | |||||||| ||||||||||||||||| || Sbjct 2138232 ACGAATTGATCTCTCGAGACGAAGGCTTACACTGCGACTTCGCGTG 2138187 Score = 84.2 bits (92), Expect = 5e-11 Identities = 158/231 (68%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | | | || || | ||| | || || |||||| |||| | || ||| Sbjct 4166023 ATACCACCTCTCAACTTTAGAACCAAATGGAGAGTTGACTCTTTCGGAATGCTGTAATCA 4166082 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | || | ||| || || || ||||| || ||||| || | || || ||| || Sbjct 4166083 GCCAAGGTACGACCATCCTCGAGCTGTTTACCGGCAAAGATCATTTGTTGCTGGTCAAGA 4166142 Query 104450 GGTATTCCTTCTTTATCCTGAATC-TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 || |||||||||||||| || ||| ||||| || || || | | | ||| ||| Sbjct 4166143 GGGATTCCTTCTTTATCTTGGATCTTTTGCCTTAACTTTGTGGATCATGTCGGAGCTTTC 4166202 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || | ||||| || ||||| |||| ||||| |||||||| Sbjct 4166203 GACCTTAAGAGTTACGGTCTTGCCTGTAAGACTTTTGACAAAGATCTGCAT 4166253 >seq1 Length=19566579 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | |||||| || || | || ||||||||||| || || || || Sbjct 19037215 ATCCCACCTCTCAGTCGAAGTACAAGGTGAAGGGTTGATTCTTTCTGGATGTTGTAATCT 19037156 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||| ||| ||||| || || || || ||||| || || |||||||| || || Sbjct 19037155 GAAAGCGTTCGACCATCTTCGAGCTGCTTGCCTGCAAATATGAGTCTCTGTTGGTCTGGT 19037096 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 | || ||||| || || |||||||| ||||| ||||| || | ||| || | || Sbjct 19037095 TGGATCCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCAATGGTGTCTGAACTCTCG 19037036 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| ||||| || ||||| ||||| || || || ||||||||||| Sbjct 19037035 ACTTCTAGGGTAATGGTTTTACCGGTAAGGGTCTTGACGAATATCTGCAT 19036986 Score = 132 bits (146), Expect = 1e-25 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || | || || | ||| | || || |||||||| || || ||||| | Sbjct 8289972 CCTCCTCTCAGACGGAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGCG 8289913 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || ||||| |||||||| || ||||| || || || || || | ||| || || || || Sbjct 8289912 AGTGTTCTCCCGTCTTCCAGCTGTTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGG 8289853 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || || || ||||| ||||| ||||| || | || || | |||||| Sbjct 8289852 ATCCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATCGTGTCTGATGACTCTACC 8289793 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTG 104565 ||||| || || ||||| || || | ||||| ||||| ||||||||||| || Sbjct 8289792 TCTAGGGTTATTGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCATTTTTTG 8289740 Score = 131 bits (144), Expect = 4e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| || || || ||||| | || || |||||||| || || || ||| Sbjct 19037671 ATCCCACCACGTAGTCTCAGCACGAGATGAAGAGTTGACTCTTTCTGGATGTTGTAATCA 19037612 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||| | ||| || || || ||||||||||||||||| || || ||||| || || Sbjct 19037611 GCAAGAGTGCGACCATCCTCAAGCTGTTTTCCAGCAAAAATGAGTCTTTGTTGGTCTGGT 19037552 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 | || ||||| || || || ||||| || || || || || | || || || | || Sbjct 19037551 GCAATCCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTATCAATTGTGTC-AGAGCTCTC 19037493 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || |||||||| |||||||| || |||||||| |||||||| Sbjct 19037492 AACTTCCAAAGTTATAGTCTTTCCAGTAAGGGTCTTTACAAAAATCTGCAT 19037442 Score = 118 bits (130), Expect = 2e-21 Identities = 112/142 (79%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 104329 TATTCCC-CCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGT 104387 || |||| || || ||||| | || | || | ||| || |||||||| ||||| || | Sbjct 10960123 TAGTCCCACCCCTGAGCCTCAAGACCAAGTGAAGTGTCGACTCTTTCTGGATATTGTAAT 10960182 Query 104388 CAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAG 104447 ||| || |||| ||| ||||| |||||||| |||||||| || |||||||||||||| | Sbjct 10960183 CAGCAAGTGTTCGACCATCTTCGAGTTGTTTCCCAGCAAATATCAGCCTCTGTTGATCCG 10960242 Query 104448 GAGGTATTCCTTCTTTATCCTG 104469 | |||||||| ||||| ||||| Sbjct 10960243 GTGGTATTCCCTCTTTGTCCTG 10960264 Score = 100 bits (110), Expect = 7e-16 Identities = 143/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || || || | || ||| ||| ||||| || || || || Sbjct 19038094 GTTGACTCTTTCTGGATGTTGTAATCCGCTAAAGTGTGACCATCTTCGAGCTGCTTCCCT 19038035 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| | ||||||||||| || || | || |||||||| |||||||||| ||| || Sbjct 19038034 GCAAAGTTAAGCCTCTGTTGGTCCGGGTGGATCCCTTCTTTGTCCTGAATCTGTGCCTTC 19037975 Query 104483 ACATTTTCTACGGTATC---GCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||| || | ||||| ||| ||| ||||| || || || || | || || | Sbjct 19037974 ACATTGTCAATCGTATCAAAGCT---TTCCACCTCAAGCGTGATGGTGCTTCCCGTCAAA 19037918 Query 104540 GTTTTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 19037917 TCCTTAACAAATATCTGCAT 19037898 >seq2 Length=14066726 Score = 140 bits (154), Expect = 7e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | |||||| ||||| | ||||| || || || || || || ||| Sbjct 7053148 ATACCACCTCTGAGACGAAGTACAAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCA 7053207 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | ||| ||||| || ||||| |||||||| || || |||||||| || || Sbjct 7053208 GCAAGGGTGCGACCATCTTCAAGCTGTTTCCCAGCAAAGATGAGTCTCTGTTGGTCTGGT 7053267 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || |||||||| || ||||||||||| || || || || || | || || || | || Sbjct 7053268 GGGATTCCTTCCTTGTCCTGAATCTTAGCCTTGACGTTATCAATTGTGTC-TGAGCTCTC 7053326 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || || ||||| || ||||| || || ||||| |||||||| Sbjct 7053327 AACCTCCAAAGTTATGGTCTTTCCGGTAAGGGTCTTCACAAAAATCTGCAT 7053377 Score = 134 bits (148), Expect = 3e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | ||| || ||||| | ||||| || || || || || || ||| Sbjct 7053376 ATACCACCTCTGAGACGAAGCACAAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCA 7053435 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | ||| || |||| || || |||||||| || |||||||| ||||| ||| Sbjct 7053436 GCAAGTGTGCGACCATCCTCTAACTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGA 7053495 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || ||||| || ||||||||||| ||||| ||||| || | ||||| || | || Sbjct 7053496 GGAATCCCTTCCTTGTCCTGAATCTTAGCTTTAACATTGTCAATAGTATC-AGAGCTCTC 7053554 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | ||||| || || || || | || || ||||| |||||||| Sbjct 7053555 AACCTCCAAAGTAATGGTTTTTCCTGTCAACGTCTTCACAAAGATCTGCAT 7053605 Score = 134 bits (148), Expect = 3e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| ||| || || | || | || ||||| ||||| ||||| || || Sbjct 7053604 ATACCACCTCTTAACCTGAGAACCAAGTGGAGAGTTGATTCCTTCTGTATATTGTAATCC 7053663 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | || | || || || || ||||| || ||||| || | || || ||||| ||| Sbjct 7053664 GCCAAGGTACGTCCATCCTCAAGCTGTTTACCGGCAAAGATCAATCTTTGCTGATCCGGA 7053723 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || ||||| || |||||||||||||| || ||||| || | || || || | || Sbjct 7053724 GGGATCCCTTCCTTGTCCTGAATCTTTGCCTTAACATTGTCGATAGTGTC-AGAGCTCTC 7053782 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || ||||| ||||| |||||||||||||| || || || ||||| Sbjct 7053783 TACCTCAAGAGTAATGGTCTTGCCAGTAAGTGTTTTCACGAAAATTTGCAT 7053833 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| || || || || || | || || | ||| || || || ||||||||| Sbjct 7052953 GTAGATTCTTTTTGGATGTTGTAATCCGCAAGTGTGCGACCATCCTCAAGCTGTTTTCCA 7053012 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || ||||| || || || || || || || |||||||||||||| ||||| Sbjct 7053013 GCAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCCTCCTTATCCTGAATCTTAGCTTTG 7053072 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || || | || ||||| | || || ||||| || || || || Sbjct 7053073 ACATTATCGATTGTGTCTGAACTCTCAACCTCCAAAGTTATGGTCTTTCCTGTGAGGGTC 7053132 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 7053133 TTCACAAAAATCTGCAT 7053149 Score = 120 bits (132), Expect = 7e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || || || ||||| |||| | ||| | ||| || || || ||||| ||| Sbjct 7052725 GTTGATTCCTTTTGGATGTTATAATCAGCCAAAGTCCGACCATCCTCAAGCTGTTTCCCA 7052784 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || ||||| || || || || || || ||||| ||||||||||| || || Sbjct 7052785 GCAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCCTCTTTGTCCTGAATCTTAGCCTTG 7052844 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || || || | || ||||| | |||||||||||||| || | ||| Sbjct 7052845 ACGTTATCAATTGTGTC-TGAGCTCTCAACCTCCAAGGTAATAGTCTTACCTGTCAATGT 7052903 Query 104542 TTTTACAAATATCTGCAT 104559 ||| ||||| || ||||| Sbjct 7052904 TTTCACAAAGATTTGCAT 7052921 >seq7 Length=17303919 Score = 113 bits (124), Expect = 1e-19 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | |||||| || | || | ||| || || ||||||||||| || ||| Sbjct 14232330 ATGCCACCTCTCAACCTAAGAACCAAGTGAAGTGTTGACTCCTTCTGAATATTGTAATCA 14232389 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || |||| ||| || || ||||| || || ||| || || || || || || || Sbjct 14232390 GCAAGGGTTCGACCATCCTCGAGTTGCTTGCCCGCATGGATAAGTCTTTGCTGGTCCGGT 14232449 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 | |||||| | || || || ||||| || || ||||| || | ||| || || | || Sbjct 14232450 AGGATTCCTACCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTC-AGAGCTCTC 14232508 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| |||| || || || || || ||||| |||||||| ||||| Sbjct 14232509 AACTTCTAGAATAATGGTTTTGCCGGTGAGAGTTTTCACAAATATTTGCAT 14232559 Score = 107 bits (118), Expect = 4e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | |||||| || | |||| || || || ||||||||||| || || Sbjct 14232102 ATGCCTCCTCTCAACCTAAGAACCAAGTGTAGAGTTGACTCCTTCTGAATATTGTAATCC 14232161 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGAT-CAGG 104448 | | ||| | || || || ||||| || || ||| | || || ||||| || | ||| Sbjct 14232162 GCCAAAGTACGGCCATCCTCAAGTTGCTTCCCCGCATAGATAAGTCTCTGCTGGTCCAGT 14232221 Query 104449 AGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 ||| |||||||| || || || ||||| || || ||||| || | ||| ||| ||| Sbjct 14232222 AGG-ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCAATGGTGTCGGAGCTTTC 14232280 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | || ||||| ||||| || || || ||||| || ||||| Sbjct 14232281 AACTTCAAGAATTATGGTCTTGCCAGTTAGAGTCTTAACAAAGATTTGCAT 14232331 >seq4 Length=14994381 Score = 111 bits (122), Expect = 4e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| ||||| | || ||||| | ||||| |||||||| || || || |||| Sbjct 9871045 CCACCTCTGAGCCTCAAGACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCC 9870986 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | |||| || ||||| ||||| || |||||||| || ||||| ||||||||||| ||| Sbjct 9870985 AAGGTTCGGCCATCTTCGAGTTGCTTACCAGCAAAGATGAGCCTTTGTTGATCAGGTGGT 9870926 Query 104453 ATTCCTTCTTTATCCTGAA 104471 || || ||||| ||||||| Sbjct 9870925 ATACCCTCTTTGTCCTGAA 9870907 >seq3 Length=15040190 Score = 84.2 bits (92), Expect = 5e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 104334 CCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATA 104393 ||||||| || | || | |||| | || |||||||||| |||||| || |||| || Sbjct 3032415 CCCCTCTCAGACGAAACATCTGATGCAGAGTTGATTCTTTCTCAATATTGTAATCAGCTA 3032474 Query 104394 GAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTA 104453 ||| || | |||| || |||||||||||||| || ||| ||||| | ||| ||| | Sbjct 3032475 AAGTGCTCCAATCTTTAAGCTGTTTTCCAGCAAATATCAGCTTCTGTCGTTCAAAAGGAA 3032534 Query 104454 TTCCTTCTTTATCCTGAATCTTTGCTTTTACATT 104487 || || || | || ||||| | ||| ||||| Sbjct 3032535 TTTGTTGCTTGACTTGGATCTTAGATTTAACATT 3032568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151386996478284