Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 4e-14 seq5 93.3 4e-14 seq1 84.2 2e-11 >seq6 Length=16577294 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | ||||| | || || || || || |||||| || |||||||||||||| Sbjct 735564 ACCACCTCTCAACCGGAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGC 735623 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | || || ||||| ||||| || | ||||| | |||||||||| || Sbjct 735624 CAAGGTACGGCCATCTTCGAGCTGTTTACCAGCGAAGATTAATCTCTGCTGATCCGGAGG 735683 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||||||| || || ||| | | | ||||| || | ||| Sbjct 735684 AATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTGTCGATGGTGTCTGAGCTCTCGAC 735743 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || ||||| || || || || |||||||||||||| |||||| Sbjct 735744 CTCGAGAGTGATGGTCTTGCCAGTTAGTGTTTTCACAAAAATTTGCATC 735792 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | ||| | || | |||||| ||| |||||| || ||||||||||| || Sbjct 14990384 ACCTCCACGAAGCCTGAGAACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGC 14990325 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || ||||||| || ||||| ||| || | || || | |||||| ||| || Sbjct 14990324 AAGGGTTCTGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGG 14990265 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCG 48677 | || |||||||| || || |||| | | | | ||||| || | | |||| Sbjct 14990264 GATACCCTCCTTGTCTTGGATCTT-GGCTTTAACGTTGTCGATGGTGTCAGAACTCTCCA 14990206 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || || ||||| || ||||| || ||||||||||| Sbjct 14990205 CCTCGAGAGTAATCGTCTTTCCGGTTAGGGTTTTGACGAAAATCTGCAT 14990157 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| |||||||| ||| ||| || || |||||||| ||||| | | || | ||||| Sbjct 735354 CACCAAATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCTAGTGTACGGCCATCCTC 735413 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||||||| | | || | | ||| || ||| || | || |||||||||| Sbjct 735414 TAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGAGGGATACCTTCCTTGTCCTG 735473 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||||| | | || || || || | ||| ||||| || ||||| Sbjct 735474 GATCTTTGCCTTGACGTTGTCG--ATAGTGTCAGAGCTCTCAACCTCGAGGGTGATGGTC 735531 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||||||||| || ||||| |||||||| Sbjct 735532 TTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 735563 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || |||||||| || ||| || || ||||||||||| ||||| || | || || Sbjct 8339185 ACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAATCTGCCAAGGTACGGCCATCTTCT 8339126 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||| ||||| || | || || | ||||||||| || | | |||||||||| Sbjct 8339125 AGCTGTTTACCAGCGAAGATCAATCTTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGG 8339066 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || ||| ||| | | | ||||| || | ||| ||||| || ||||| || Sbjct 8339065 ATCTTCGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTCTTG 8339006 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || ||||| |||||||| ||||| |||||| Sbjct 8339005 CCAGTGAGTGTTTTCACGAAAATTTGCATC 8338976 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||| | || | |||||| || |||||| || |||||||| ||||| Sbjct 2562837 ACCACCACGGAGCCTGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC 2562896 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 |||| || | ||||| ||||| || || || | || | | |||||| ||| || Sbjct 2562897 CAATGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGAGG 2562956 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||||||| || || ||| | | ||||| || | ||| Sbjct 2562957 GATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTATCAATGGTGTCTGAGCTCTCAAC 2563016 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||||| || || ||||||||||| || |||||||||||||| Sbjct 2563017 CTCCAAGGTTATTGTCTTGCCGGTGAGAGTCTTGACAAAAATCTGCAT 2563064 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || ||||| || ||| ||| || || ||||||||||| ||||| || | || || Sbjct 6990900 ACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCA 6990959 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||| |||||| || | || || | ||||| ||| || | | |||||||||| Sbjct 6990960 AGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGG 6991019 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||| | | | ||||| || | ||| ||| | || ||||| ||| Sbjct 6991020 ATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCGACCTCAAGAGTGATGGTCTTA 6991079 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || ||||| |||||||| ||||| |||||| Sbjct 6991080 CCAGTGAGTGTTTTCACGAAAATTTGCATC 6991109 >seq5 Length=13709650 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/215 (71%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| | |||||| || ||||| || |||||||| || |||| | || || |||| | Sbjct 13270581 CACCAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGC-CGTCTT 13270523 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| || | || || |||||||| ||| || | | ||||||||| Sbjct 13270522 CCAGCTGCTTCCCGGCGAATATCAACCGCTGCTGGTCCGGTGGGATCCCTTCCTTGTCTT 13270463 Query 48636 TAATTTTCTGCTT---GATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGG 48692 || ||| |||| || | || || || || | |||||| ||| | ||||||| Sbjct 13270462 GGATCTTC-GCTTTCACATTGTCG--ATCGTGTCTGACGACTCCACCTCTAGGGTTATGG 13270406 Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | || || || || |||||||| || ||||||||| Sbjct 13270405 TCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 13270371 >seq1 Length=19566579 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| | || | | ||| |||||||| || ||| || || |||||||| || || Sbjct 8289973 ACCTCCTCTCAGACGGAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGC 8289914 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | | || | |||| |||||||| || ||| || | || | ||||||||| ||| || Sbjct 8289913 GAGTGTTCTCCCGTCTTCCAGCTGTTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGG 8289854 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTG---ATAGACGCTATGGTATCGGTAGACTC 48675 | | ||||||||| || ||| |||| || | || || || || | ||||| Sbjct 8289853 GATCCCTTCCTTGTCTTGGATCTTC-GCTTTCACATTGTCG--ATCGTGTCTGATGACTC 8289797 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||||| || || || || | ||||||||||| |||||||| Sbjct 8289796 TACCTCTAGGGTTATTGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCAT 8289746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421247231418773