Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1 122 5e-23 seq8 120 2e-22 seq2 120 2e-22 seq7 111 8e-20 seq3 111 8e-20 seq6 102 4e-17 seq5 102 4e-17 seq4 102 4e-17 >seq1 Length=19566579 Score = 122 bits (134), Expect = 5e-23 Identities = 84/95 (88%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 ||| |||||||||| ||| ||||||||| | | |||||||| ||||||||||||||| Sbjct 4621843 AATCAATAAAAAATGAAAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTAT 4621902 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||||||||||||||||||| Sbjct 4621903 TAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 4621937 Score = 118 bits (130), Expect = 6e-22 Identities = 82/93 (88%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||| |||| |||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 2038368 AATATTAAAT--AATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 2038311 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTCG 11533 |||||||| |||||||||||||||||||| ||| Sbjct 2038310 GACGCTCTAACCAACTGAGCTAATGGGCCTTCG 2038278 Score = 113 bits (124), Expect = 2e-20 Identities = 81/93 (87%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 11438 ATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||| ||||||||| ||| ||||| || | ||||||||||| |||||||||||||||| Sbjct 10859921 ATTTATAAAAAATAAAAAGTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTA 10859862 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||||||||||| |||| Sbjct 10859861 GCACGACGCTCTAACCAACTGAGCTAATAGGCC 10859829 >seq8 Length=13324298 Score = 120 bits (132), Expect = 2e-22 Identities = 82/92 (89%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 13100374 AAAAAATAAAAGATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGA 13100433 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 |||||| |||||||||||||||||||||| || Sbjct 13100434 CGCTCTAACCAACTGAGCTAATGGGCCGTTGA 13100465 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 8897361 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 8897302 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 8897301 TGAGCTAATGGGCC 8897288 >seq2 Length=14066726 Score = 120 bits (132), Expect = 2e-22 Identities = 77/85 (91%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| |||| ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 9246379 AAAAAACAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 9246320 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 9246319 CTCTAACCAACTGAGCTAATGGGCC 9246295 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 9353792 AAAGTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 9353733 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 9353732 CAACTGAGCTAATAGGCC 9353715 >seq7 Length=17303919 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 16909102 AAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 16909161 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 16909162 CAACTGAGCTAATGGGCC 16909179 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 696844 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 696785 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 696784 TGAGCTAATGGGCC 696771 Score = 98.7 bits (108), Expect = 5e-16 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||| | |||||||||||||||||||||||||||| || Sbjct 5448060 AAAATGGCCTATACAGGGATCGAACGTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 5448001 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 5448000 CAACTGAGCTAATAGGCC 5447983 >seq3 Length=15040190 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 482872 AAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 482813 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 482812 CAACTGAGCTAATGGGCC 482795 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 13512538 AAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 13512479 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 13512478 CAACTGAGCTAATGGGCC 13512461 >seq6 Length=16577294 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 5182226 AAAGTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 5182167 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 5182166 CAACTGAGCTAATAGGCC 5182149 Score = 98.7 bits (108), Expect = 5e-16 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| | ||| ||||| || | ||||||||||| ||||||||||||||||||||||| Sbjct 5182397 AAAATAAAAAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGAC 5182338 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 5182337 GCTCTAACCAGCTGAGCTAATAGGCC 5182312 >seq5 Length=13709650 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 1432960 AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 1433019 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 1433020 CAACTGAGCTAATAGGCC 1433037 >seq4 Length=14994381 Score = 102 bits (112), Expect = 4e-17 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||| || | ||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 568881 AAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACC 568822 Query 11513 AACTGAGCTAATGGGCCGTC 11532 |||||||||||| |||| || Sbjct 568821 AACTGAGCTAATAGGCCATC 568802 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| || | ||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 506929 TGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 506988 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 506989 TGAGCTAATAGGCC 507002 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261488736507748