Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq8 170 3e-38 seq1 161 2e-35 seq5 134 2e-27 seq4 134 2e-27 >seq8 Length=13324298 Score = 170 bits (188), Expect = 3e-38 Identities = 183/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||||||||| || || || | |||||||| | ||||||| Sbjct 10234184 GAGACAACATCCAAGGAATCACCAAGCCTGCGATTCGGAGGTTGGCTCGTAGAGGTGGAG 10234243 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||| ||||||| ||||| ||| | |||||||| | Sbjct 10234244 TCAAGCGTATCAGTGGTCTGATCTACGAAGAGACTCGTGGTGTCCTCAAGATCTTTTTGG 10234303 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| |||| ||| ||| | ||| ||||||||||| | | |||||||||||| Sbjct 10234304 AGAACGTGATCCGTGACGCTGTTACCTACACCGAGCACGCCAGGAGGAAGACTGTCACCG 10234363 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| ||||||| || | || | ||||| || | | || ||||| || ||| Sbjct 10234364 CCATGGATGTCGTCTACGCTCTCAAGAGGCAAGGACGGACTCTCTACGGTTTCGGCGGTT 10234423 Query 16698 AA 16699 || Sbjct 10234424 AA 10234425 >seq1 Length=19566579 Score = 161 bits (178), Expect = 2e-35 Identities = 185/249 (74%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||| |||| ||||||||||||||||| |||||||| || ||||||||||||||| | || Sbjct 2495254 TCTTAGAGACAACATCCAAGGAATCACGAAGCCAGCCATTCGTCGTCTGGCTCGTAGAGG 2495195 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || |||||| || ||| | |||| || |||| | | || | |||||||| Sbjct 2495194 TGGTGTGAAGCGTATCAGTGGTCTCATCTACGAGGAGACCAGAGGAGTCCTCAAGATCTT 2495135 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| || |||| ||| || || ||| || |||||||| | | |||||||| Sbjct 2495134 TCTCGAGAATGTCATCCGTGACGCCGTCACCTACACTGAGCACGCCAGGAGGAAGACTGT 2495075 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| |||||||| | ||||| || ||||| | ||||| || | | || ||||| || Sbjct 2495074 GACCGCCATGGATGTTGTCTACGCCTTGAAGAGGCAAGGTCGCACTCTCTACGGTTTCGG 2495015 Query 16693 AAGTTAATC 16701 ||||||| Sbjct 2495014 CGGTTAATC 2495006 Score = 147 bits (162), Expect = 3e-31 Identities = 179/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 ||||||||||||||||||| || |||||||| || ||||||||||||||| | ||||| | Sbjct 2445567 GAGATAACATCCAAGGAATAACGAAGCCAGCCATTCGTCGTCTGGCTCGTAGAGGTGGTG 2445626 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || || | |||| || |||| | | || | |||||||| ||| Sbjct 2445627 TGAAGCGTATCAGCGGTCTCATCTACGAGGAGACCAGAGGAGTCCTCAAGATCTTTCTCG 2445686 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || |||| ||| || | ||| || |||||||| | | |||||||| ||| Sbjct 2445687 AGAATGTCATCCGTGACGCCGTAACCTACACTGAGCACGCCAGGAGGAAGACTGTGACCG 2445746 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | ||||| || ||||| | ||||| || | | || ||||| || ||| Sbjct 2445747 CCATGGATGTTGTCTACGCCTTGAAGAGGCAAGGTCGCACTCTCTACGGTTTCGGCGGTT 2445806 Query 16698 AATC 16701 |||| Sbjct 2445807 AATC 2445810 >seq5 Length=13709650 Score = 134 bits (148), Expect = 2e-27 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||| ||||| || || ||| | |||||||| | ||||| | Sbjct 6843498 GAGACAACATCCAAGGAATCACTAAGCCGGCGATTCGTAGATTGGCTCGTAGAGGTGGTG 6843557 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||| ||||||| |||| ||| | |||||||| | Sbjct 6843558 TCAAGCGTATCAGTGGTCTGATCTACGAAGAGACACGTGGCGTTCTCAAGATCTTTTTGG 6843617 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| |||| ||| || | || ||||||||||| | | ||||| || ||| Sbjct 6843618 AGAACGTGATCCGTGACGCCGTTACTTACACCGAGCACGCAAGGAGGAAGACGGTGACCG 6843677 Query 16638 CCATGGATATCGTCTATGC 16656 |||||||| | || ||||| Sbjct 6843678 CCATGGATGTGGTTTATGC 6843696 Score = 134 bits (148), Expect = 2e-27 Identities = 175/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||| ||||| || || ||| | |||||||| | ||||| | Sbjct 6997172 GAGACAACATCCAAGGAATCACTAAGCCGGCGATTCGTAGATTGGCTCGTAGAGGTGGCG 6997113 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||| ||||||| |||| || | |||||||| | Sbjct 6997112 TCAAGCGTATCAGTGGTCTGATCTACGAAGAGACACGTGGCGTCCTCAAGATCTTTTTGG 6997053 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| |||||||| ||| || | || ||||||||||| | | ||||| || ||| Sbjct 6997052 AGAACGTTATCCGTGACGCCGTTACTTACACCGAGCACGCAAGGAGGAAGACGGTGACCG 6996993 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || ||||| | || | ||||| | | |||| || || || ||| Sbjct 6996992 CCATGGATGTGGTTTATGCTCTCAAGAGACAAGGAAGGACTCTTTACGGATTCGGCGGTT 6996933 Query 16698 AA 16699 || Sbjct 6996932 AA 6996931 Score = 107 bits (118), Expect = 3e-19 Identities = 169/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||| | | ||| |||| ||||||||||| || || || || || || Sbjct 10049217 GCCAAGAGGCATCGGAAAGTTCTAAGAGACAACATCCAAGGGATTACGAAACCTGCGATT 10049158 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || | | || || || |||||| || ||| ||| |||| || |||| Sbjct 10049157 CGTCGTCTCGCCAGAAGAGGAGGCGTGAAGCGTATCAGTGGTTTGATCTACGAGGAGACC 10049098 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | |||||||| ||| ||| ||| || | ||| || | || || ||| Sbjct 10049097 CGCGGCGTTCTCAAGATCTTTCTCGAGAACGTGATTCGTGACGCCGTTACTTACACGGAG 10049038 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| ||||| | ||||| ||||||| || | || | ||||| Sbjct 10049037 CACGCTCGCCGGAAGACAGTCACGGCGATGGACGTCGTCTACGCTCTCAAGAGACAAGGA 10048978 Query 16673 CG 16674 || Sbjct 10048977 CG 10048976 >seq4 Length=14994381 Score = 134 bits (148), Expect = 2e-27 Identities = 187/261 (72%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||| |||||||| || |||||||| ||||| | || |||| Sbjct 6878414 GAGACAACATCCAAGGAATCACAAAGCCAGCGATACGTCGTCTAGCTCGAAGAGGAGGAG 6878355 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | || ||| || ||| || |||| ||||| | | | ||| ||||||||||| ||| Sbjct 6878354 TGAAACGTATCAGTGGTCTGATCTACGAAGAAACGAGAGGTGTGTTGAAGATCTTTCTCG 6878295 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || |||||| | || || || ||||||| | |||||||| || Sbjct 6878294 AGAATGTGATTAGAGATGCTGTGACGTACACTGAACACGCTAGGAGGAAGACTGTTACTG 6878235 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 ||||||| | || ||||| ||||| | ||||| | | ||||||| || || ||| Sbjct 6878234 CCATGGACGTTGTTTATGCTTTGAAGAGACAAGGAAGAACTCTTTATGGATTCGGTGGTT 6878175 Query 16698 AA--TCTTCTAATCAAACTTC 16716 | | || |||| ||| ||| Sbjct 6878174 GAGTTTTTTTAATTAAATTTC 6878154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074493240689