Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq1 102 1e-16 >seq1 Length=19566579 Score = 102 bits (112), Expect = 1e-16 Identities = 238/353 (67%), Gaps = 12/353 (3%) Strand=Plus/Minus Query 194593 TATGTATTTCTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTACCTATCCTGCC 194652 ||||| | || ||||| ||||| || ||||| || || ||| || || || || Sbjct 6189210 TATGTGATCCTAGCTGCAGCTAAAGTCGGTGGGATTCATGCCAACAACACATACCCAGCT 6189151 Query 194653 GATTTCATCTATGACAATCTGATGATTCAGACAAATGTTATTGATGCTGCATATCGTAAT 194712 |||||||| || |||||| || ||||| ||||| || | |||| ||| | Sbjct 6189150 GATTTCATTAGTGTCAATCTCCAAATCCAGACCAATGTGATCCACTCTGCTTATACGCAC 6189091 Query 194713 GGAGTTAAGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCTAAGTT---TCCAAAG 194769 || || |||||||| | || || || ||||||||||| || || || || ||| | Sbjct 6189090 GGTGTGAAGAAACTCCTCTTCCTCGGCTCATCTTGCATTTACCCCAAATTCGCTCCTCA- 6189032 Query 194770 ATACCTATTACAGAGGATCAG--TTACTTGCTAGTCCTTTGGAAGAATCTAA-TAGTGCT 194826 ||| ||| | || ||| | | || || ||||| | ||| |||| |||| Sbjct 6189031 --ACCGATTCCTGA--ATCCGCTCTTCTCACTGGTCCTCTTGAACCGACTAACGAGTG-G 6188977 Query 194827 TATGCAATTGCAAAGATAGCAGGTATGAGGATGTGTCAAGCATATCGTCAGCAGTATGGA 194886 || || ||||| ||||| ||||| || | |||||||||||| || | | ||| || | Sbjct 6188976 TACGCCATTGCCAAGATTGCAGGGATTAAGATGTGTCAAGCTTACAGGCTTCAGCATCAA 6188917 Query 194887 TTTAATGCAATATCATTAATGCCTACTAATCTATACGGACCTAATGATAATTT 194939 | |||| || || ||||| || ||||| ||||| || ||||| ||||| Sbjct 6188916 TGGGATGCCATCTCCGGTATGCCCACCAATCTCTACGGTCCAAATGACAATTT 6188864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807547396997880