Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq4 93.3 4e-14 seq6 84.2 2e-11 >seq4 Length=14994381 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 |||||||| || ||||| || ||||||||||| ||||| | | || || ||||||||| Sbjct 9870912 GACAAAGAGGGTATACCACCTGATCAACAAAGGCTCATCTTTGCTGGTAAGCAACTCGAA 9870971 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| ||| | | || || ||||| || ||||| |||||| | ||||| ||| || Sbjct 9870972 GATGGCCGAACCTTGGCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTTG 9871031 Query 26982 AGACTTAGAGGAGG 26995 || || ||||| || Sbjct 9871032 AGGCTCAGAGGTGG 9871045 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || |||||||| |||| |||| ||| Sbjct 14616595 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTCGAGGTAGAGTCA 14616654 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||||||||| | || || ||||| ||||| ||||| || || || || Sbjct 14616655 TCTGACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCGCCGGAC 14616714 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || || | |||| || ||| || || ||||| || | ||| | | |||||| Sbjct 14616715 CAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAGGACGGACGAACCTTAGCCGACTAC 14616774 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || || | || || ||||| Sbjct 14616775 AACATCCAGAAGGAGTCAACGCTTCACCTTGTCCT 14616809 >seq6 Length=16577294 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAAA 26827 |||||| | ||||| |||||| ||||||| || | ||||| |||| | || | | | Sbjct 735791 ATGCAAATTTTTGTGAAAACACTAACTGGCAAGACCATCACTCTCGAGGTCGAGAGCTCA 735732 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||| | || || |||||| ||||| ||||| || ||||| ||||| Sbjct 735731 -GACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCA 735673 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG 26925 || ||| | || | || || ||||| |||||||||| Sbjct 735672 GCAGAGATTAATCTTCGCTGGTAAACAGCTCGAAGATG 735635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478657774924560