Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq7 113 1e-19 seq4 111 4e-19 seq3 104 6e-17 seq5 91.5 4e-13 >seq7 Length=17303919 Score = 113 bits (124), Expect = 1e-19 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 |||||||| ||| ||||||||| || | |||||| | || | |||||| |||| | Sbjct 446368 ATGAAGGATGATAGCATCGAGGGAATATATGACACGTTGAAAGAGTGTGCTGTTATAAGC 446427 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || ||||| || ||||||||||| | ||||| | ||||| || | | |||||||| Sbjct 446428 AAATCAGCAGGGGGTATTGGTGTATCAGTTCACAACATCCGTGCAACTGGA-AGTTACAT 446486 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| |||||| ||| || ||||| | ||||| ||||| || || || | |||| Sbjct 446487 TCGTGGCACAAACGGAGCATCTAATGGTATCGTTCCAATGCTGCGGGTATTCAATGATAC 446546 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||| | || || ||||| || ||||| ||| | ||||| Sbjct 446547 TGCTCGTTATGTTGACCAAGGAGGAGGCAAGAGGAAAGG 446585 Score = 96.9 bits (106), Expect = 9e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111592 ATGTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGA 111651 |||| ||| | |||| |||||||| || | | | || || || ||| || |||| Sbjct 2149805 ATGTAATTAACAAAATCAAGAACAATCCTGATGATAGACGAATCATAATGTCAGCTTGGA 2149864 Query 111652 ACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTAT 111710 |||| || || | ||||||||||| ||||| || | | | ||| ||||||||| Sbjct 2149865 ACCCTCCTGATCTGAAGTTGATGGCACTTCCTCCATGCCA-CATGTTTGCTCAGTTTTAT 2149923 Query 111711 GTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGT 111770 || | || |||||||| |||||||||||||| || || ||||| ||||| ||| Sbjct 2149924 GTTGCAAATGGAGAACTTTCATGTCAAATGTATCAGCGCTCAGCCGATATGGGTCTCGGT 2149983 Query 111771 GTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 || || ||||| ||||| ||| | || ||||| ||| | | ||||| Sbjct 2149984 GTACCATTTAACATTGCCTCATACTCTCTTCTTACATGCATTCTGGCTCA 2150033 >seq4 Length=14994381 Score = 111 bits (122), Expect = 4e-19 Identities = 159/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| ||| || || || | ||| ||||| || | |||||| |||| | Sbjct 294706 ATGAAAGATGATAGCATTGAAGGCATATATGAAACACTCAAAGAGTGTGCTGTTATAAGC 294765 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAACAGTTACAT 363740 || ||| ||||| |||||||| || | || ||| |||||||| | | | |||||||| Sbjct 294766 AAATCTGCTGGCGGTATTGGTGTTTCAGTTCATAATATTCGTGCAACTGGA-AGTTACAT 294824 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| |||||| ||| || || || | ||||| ||||| ||||| || | |||| Sbjct 294825 TCGTGGCACAAATGGAACATCTAACGGTATTGTTCCAATGCTGCGTGTATTCAATGATAC 294884 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || |||||||| || ||||| ||| | |||||| Sbjct 294885 TGCTCGTTATGTCGACCAAGGAGGAGGCAAGAG-AAAGGG 294923 >seq3 Length=15040190 Score = 104 bits (114), Expect = 6e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||| ||||| || ||| || || || ||||||||||| || || || || || Sbjct 12702251 CAGTTCTATGTGGCAGAAGGGGAACTCTCGTGTCAAATGTATCAACGTTCAGCAGACATG 12702192 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 || |||||||| |||||||| ||||| ||| | || ||||||||| | | |||||| Sbjct 12702191 GGCCTTGGTGTGCCGTTTAACATTGCTTCCTACTCTCTTCTTACTTGCATGCTTGCTCAT 12702132 Query 111822 TTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACA 111881 | |||||| || ||||| || || || ||||| || ||||| ||||| |||| | Sbjct 12702131 GTGTGCAATCTCGTTCCTGGTGATTTTATCCATGTTATAGGGGATGCTCATGTGTACAGA 12702072 Query 111882 AACCA 111886 || || Sbjct 12702071 AATCA 12702067 >seq5 Length=13709650 Score = 91.5 bits (100), Expect = 4e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 22783 ATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAG 22842 |||||| |||||| | ||||| || ||| | || || | | || || || | ||| Sbjct 2138050 ATGAGTCAGTATATTGAGTTTGTAGCGGATAGGCTTTTGGGTGCGCTTGGGTACGGGAAG 2137991 Query 22843 CATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACC 22902 ||| || |||||| ||||| |||||||||||||| || ||| |||| ||||| Sbjct 2137990 GTGTATGGTGTGACTAATCCTTTTGATTGGATGGAACTTATCTCGCTTCAAGGGAAGACG 2137931 Query 22903 AATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGC 22940 || |||||||| ||| | ||||| || |||||||| || Sbjct 2137930 AACTTCTTCGAGAAACGCGTTGGCGATTACCAAAAGGC 2137893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303340691504486