Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 seq7 93.3 4e-14 seq1 91.5 1e-13 seq4 84.2 2e-11 >seq6 Length=16577294 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| |||||| ||||||| || | || || |||| |||||| | Sbjct 735791 ATGCAAATTTTTGTGAAAACACTAACTGGCAAGACCATCACTCTCGAGGTCGAGAGCTCA 735732 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || |||||| ||||| |||||||| ||||| ||||| Sbjct 735731 GACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAG 735672 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| | || | || || || || |||||||||| | | | | | ||||| ||| Sbjct 735671 CAGAGATTAATCTTCGCTGGTAAACAGCTCGAAGATGGCCGTACCTTGGCTGATTACAAC 735612 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || || || | || || || | | |||||||| || Sbjct 735611 ATCCAGAAGGAGTCGACCCTCCACTTGGTTCTCCGGTTGAGAGGTGG 735565 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || |||||| | ||||| || | || || | || |||||| | Sbjct 6991108 ATGCAAATTTTCGTGAAAACACTCACTGGTAAGACCATCACTCTTGAGGTCGAGAGCTCT 6991049 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || |||||| ||||| |||||||| ||||| || || Sbjct 6991048 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGACCAG 6990989 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| |||| | || ||| || || || ||||||| | | | | | |||||| ||| Sbjct 6990988 CAAAGATTGATCTTCGCCGGTAAACAGCTTGAAGATGGCCGCACCTTGGCCGATTACAAC 6990929 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || ||||| || || | ||||| || | | || ||||| || Sbjct 6990928 ATCCAGAAAGAGTCCACCCTCCATTTGGTTCTCCGTTTAAGAGGTGG 6990882 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| ||||| ||||||| |||| || ||| Sbjct 14990157 ATGCAGATTTTCGTCAAAACCCTAACCGGAAAGACGATTACTCTCGAGGTGGAGAGTTCT 14990216 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| ||||| ||||| || || || ||||| || || Sbjct 14990217 GACACCATCGACAACGTTAAAGCCAAGATCCAAGACAAGGAGGGTATCCCTCCGGACCAG 14990276 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || ||| ||||||||||| || | ||||| | | |||||| ||| Sbjct 14990277 CAGAGGTTGATCTTCGCCGGAAAGCAACTCGAGGACGGCAGAACCCTTGCCGATTACAAC 14990336 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || || || || || ||||| Sbjct 14990337 ATCCAGAAGGAGTCCACCCTTCAT 14990360 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | |||||||| | ||||| | || || ||| | Sbjct 2563292 ATGCAGATCTTCGTCAAAACCCTTACTGGAAAGACTATTACTTTGGAGGTGGAGAGCTCT 2563233 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| || ||| || || || || || || || || || Sbjct 2563232 GACACCATCGACAATGTCAAAGCTAAAATTCAAGATAAGGAGGGAATCCCACCAGACCAG 2563173 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 |||||| |||| | || || |||||||| ||||| | ||| || | || || ||||| Sbjct 2563172 CAGAGATTGATCTTCGCTGGAAAGCAACTTGAAGACGGCAG-GACTTTGGCTGACTATAA 2563114 Query 24170 CATTCAAAAAGAATCTACAATTCAT 24194 ||| || || || |||||| ||||| Sbjct 2563113 CATCCAGAAGGAGTCTACACTTCAT 2563089 >seq7 Length=17303919 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | || || ||| | ||||| | ||||| ||| | Sbjct 14231875 ATGCAAATATTTGTGAAAACTCTCACCGGCAAAACCATTACTCTAGAAGTTGAGAGCTCT 14231816 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | |||||| ||||| ||||| ||||| || ||||| || ||| Sbjct 14231815 GACACCATTGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGGATCCCTCCGGACCAA 14231756 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGCGATTATAA 24169 || |||| || | | |||||||||||||| ||| | | || || | | ||||| || Sbjct 14231755 CAACGACTTATCTTTGCGGGCAAGCAACTCGAGGATGGTCGGACACTTGCG-GATTACAA 14231697 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||| || || || || || | ||||| || Sbjct 14231696 CATCCAGAAGGAGTCAACTCTGCATTTGGT 14231667 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | || || ||| | |||| | ||||| ||| | Sbjct 14232559 ATGCAAATATTTGTGAAAACTCTCACCGGCAAAACCATTATTCTAGAAGTTGAGAGCTCT 14232500 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| ||||| ||||| | ||| || | || || || Sbjct 14232499 GACACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGTAGGAATCCTACCGGACCAG 14232440 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||||| || | | |||||||||||||| |||| ||| | | ||||| || Sbjct 14232439 CAAAGACTTATCCATGCGGGCAAGCAACTCGAGGATGGTCGAACCCTTGCTGATTACAAT 14232380 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || || ||| |||| || || | || |||||||| || Sbjct 14232379 ATTCAGAAGGAGTCAACACTTCACTTGGTTCTTAGGTTGAGAGGTGG 14232333 >seq1 Length=19566579 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || ||| | |||||| | ||||||||| Sbjct 19036986 ATGCAGATATTCGTCAAGACCCTTACCGGTAAAACCATTACCCTAGAAGTCGAGAGTTCA 19037045 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || ||| |||||| ||||| ||||| || | || || ||| Sbjct 19037046 GACACCATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGGATCCAACCAGACCAA 19037105 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACG---TCAGCGATTAT 24167 |||||||| || | | |||||||| |||||||||| | |||| ||| ||||| Sbjct 19037106 CAGAGACTCATATTTGCAGGCAAGCAGCTCGAAGATGGTCG-AACGCTTTCA--GATTAC 19037162 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || |||||||| || |||| | || | || ||||||| || Sbjct 19037163 AACATCCAGAAAGAATCAACCCTTCACCTTGTACTTCGACTGAGAGGTGG 19037212 >seq4 Length=14994381 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 |||||||| || ||||| || |||||||| || || || | | || |||||||||||| Sbjct 9870912 GACAAAGAGGGTATACCACCTGATCAACAAAGGCTCATCTTTGCTGGTAAGCAACTCGAA 9870971 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| | ||| | | ||||| ||||| || ||||| ||||| ||||| | || || Sbjct 9870972 GATGGCCGAACCTTGGCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTTG 9871031 Query 24204 AGATTGAGAGGAGG 24217 || | ||||| || Sbjct 9871032 AGGCTCAGAGGTGG 9871045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429931949599815