Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq7 87.8 2e-12 seq6 87.8 2e-12 >seq7 Length=17303919 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| ||||| || ||||||||||| | ||| ||| | Sbjct 14231875 ATGCAAATATTTGTGAAAACTCTCACCGGCAAAACCATTACTCTAGAAGTTGAGAGCTCT 14231816 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| || ||||| || ||| || || || || ||||| |||| || || Sbjct 14231815 GACACCATT-GACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGGATCCCTCCGGACCA 14231757 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| ||||||| | ||||||||| ||| | || |||| || | || ||||| || Sbjct 14231756 ACAACGACTTATCTTTGCGGGCAAGCAACTCGAGGATGGTCGGACACTTGCGGATTACAA 14231697 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494 ||| || || ||||| ||| | ||| |||| Sbjct 14231696 CATCCAGAAGGAGTCAACTCTGCATTTGGT 14231667 >seq6 Length=16577294 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| || ||||| ||||| || || ||||| || |||| ||| | Sbjct 8338977 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 8339036 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || || || || || |||||| | || ||||| Sbjct 8339037 GACACCATTG-ACAATGTTAAGGCGAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCA 8339095 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||| | || | || || ||||| ||||||||| | ||| |||| ||||| || Sbjct 8339096 GCAAAGATTGATCTTCGCTGGTAAACAGCTAGAAGATGGCCGTACCTTGGCAGATTACAA 8339155 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494 ||| || |||||||| || | ||| |||| Sbjct 8339156 CATCCAGAAAGAGTCAACCCTTCATTTGGT 8339185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425339992860760