Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq6 125 7e-24 seq5 125 7e-24 seq4 122 8e-23 seq7 111 1e-19 seq1 104 2e-17 seq2 98.7 9e-16 >seq6 Length=16577294 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | |||||| ||||| ||||||||||| || | Sbjct 2562610 CCACCACGGAGACGGAGGACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCTGCC 2562669 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| |||||||| || ||| |||| | ||||||||||||||||||| Sbjct 2562670 AGTGTGCGACCGTCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 2562729 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| || ||| | | || | || |||| | ||| | Sbjct 2562730 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCAACC 2562789 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| | || || || ||||||||||| Sbjct 2562790 TCAAGGGTGATGGTCTTCCCGGTCAACGTCTTCACAAAAATCTGCAT 2562836 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||| ||||| ||||| | ||| ||||| || || ||||||||||| | Sbjct 6990426 CCACCTCTCAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGCC 6990485 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||||||||||| || || |||| | | |||||| ||||| ||| Sbjct 6990486 AAGGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGTGGG 6990545 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| ||||| || ||| || |||| | || | ||||| | | ||| | Sbjct 6990546 ATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATGGTATCTGAGCTCTCAACC 6990605 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | |||||||| || ||||| || || || |||||||| Sbjct 6990606 TCTAGGGTGATTGTTTTACCAGTGAGAGTCTTCACAAAGATCTGCAT 6990652 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| | || ||| ||||| ||||| | ||| ||||| || || |||||||| || ||| Sbjct 735337 CCACCTCTCAGACGAAGCACCAAATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCT 735396 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || | |||||||||||||| || || |||| | | ||| ||||||||||| Sbjct 735397 AGTGTACGGCCA-TCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGAGG 735455 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||| || ||||| | || | ||| || | | ||| | Sbjct 735456 GATACCTTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATAGTGTCAGAGCTCTCAAC 735515 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || ||||| ||||| || || || |||||||| Sbjct 735516 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 735563 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||| || || || || || | |||||||||||| || ||||||||||| | Sbjct 735565 CCACCTCTCAACCGGAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGCC 735624 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || ||||| || || ||| ||||||| | |||||| |||||||| Sbjct 735625 AAGGTACGGCCATCTTCGAGCTGTTTACCAGCGAAGATTAATCTCTGCTGATCCGGAGGA 735684 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | || | || || | | ||||| Sbjct 735685 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTGTCGATGGTGTCTGAGCTCTCGACC 735744 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || ||||| ||||| || ||||| ||||| Sbjct 735745 TCGAGAGTGATGGTCTTGCCAGTTAGTGTTTTCACAAAAATTTGCAT 735791 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||||| || || ||||| | ||| ||||| || || |||||||||||| | Sbjct 6990882 CCACCTCTTAAACGGAGAACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCGGCC 6990941 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||| || || ||| |||| || | |||||||||||||| Sbjct 6990942 AAGGTGCGGCCATCTTCAAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGA 6991001 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | || | || || | | ||||| Sbjct 6991002 ATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCGACC 6991061 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| ||||| || || ||||| |||||||| ||||| Sbjct 6991062 TCAAGAGTGATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 6991108 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | ||| ||||||||||| |||||||| || | Sbjct 14991295 CCACCACGGAGACGGAGGACGAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCC 14991236 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||| ||||| ||| |||| | ||||||||||||||||||| Sbjct 14991235 AAAGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 14991176 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | || | || |||| | ||| | Sbjct 14991175 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCGGAGCTCTCCACT 14991116 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| | || || || || |||||||| Sbjct 14991115 TCCAGTGTGATGGTCTTCCCGGTCAAGGTCTTGACAAAGATCTGCAT 14991069 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || | ||| | |||||||||||| || |||||||| || || ||||| ||| Sbjct 2562853 AGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAATGTGCGACCATCC 2562912 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || ||||| ||||| ||| |||| | | |||||||||||||||||||||||| ||||| Sbjct 2562913 TCAAGCTGTTTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCC 2562972 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||| || ||| | | || | || || | | ||| | || | ||| | || Sbjct 2562973 TGGATCTTGGCCTTCACGTTATCAATGGTGTCTGAGCTCTCAACCTCCAAGGTTATTGTC 2563032 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || ||||| ||||| || || ||||||||||| Sbjct 2563033 TTGCCGGTGAGAGTCTTGACAAAAATCTGCAT 2563064 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAAT-CGCT 131066 ||||| || | ||| ||||| || || | ||| |||||||| || |||||||||| |||| Sbjct 735109 CCACCACGGAGACGAAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCCGCT 735168 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| || || |||||||| || ||| |||| | | ||||||||| || || Sbjct 735169 -AGGGTGCGTCCATCTTCGAGCTGCTTCCCAGCGAAGATGAGTCTCTGCTGGTCTGGTGG 735227 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 ||| ||||| ||||| ||| | | || |||| | || | || || | | ||| | Sbjct 735228 GATCCCTTCCTTGTC-CTGAATCTTGGCTTTGACGTTGTCGATTGTGTCAGAGCTCTCCA 735286 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || |||||||| || || || ||||||||||| Sbjct 735287 CCTCCAAAGTGATGGTCTTGCCGGTTAGGGTCTTGACAAAAATCTGCAT 735335 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || | ||| | ||| |||||||| || |||||||||||| | ||| | |||| Sbjct 14990368 AGAACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGCAAGGGTTCTGCCGTCC 14990309 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || || ||||| || ||| |||| || | |||||||||||||||||| || || ||||| Sbjct 14990308 TCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCCTCCTTGTCT 14990249 Query 131143 GTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 ||| || |||| | | | || | || || | ||| | |||| |||| || Sbjct 14990248 TGGATCTT-GGCTTTAACGTTGTCGATGGTGTCAGAACTCTCCACCTCGAGAGTAATCGT 14990190 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || |||||||| ||||| |||||||||||||| Sbjct 14990189 CTTTCCGGTTAGGGTTTTGACGAAAATCTGCAT 14990157 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || || || | ||| |||||||| || |||||||| ||| | Sbjct 14990839 CCACCACGTAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCC 14990780 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| | |||||| || || |||| || | |||||||||||| ||| Sbjct 14990779 AAGGTACGACCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGG 14990720 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || |||||||| ||| || ||| | | || | || || | | || | Sbjct 14990719 ATACCCTCTTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGCTTTCAACT 14990660 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || ||||| |||||||| ||||| |||||||| Sbjct 14990659 TCCAAGGTGATTGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCAT 14990613 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || || || || ||||| | ||| ||||| || || ||||||||||| | Sbjct 8339203 CCACCTCTCAGCCGGAGAACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAATCTGCC 8339144 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || |||||||| || || ||| |||| || | ||||| |||||||| Sbjct 8339143 AAGGTACGGCCATCTTCTAGCTGTTTACCAGCGAAGATCAATCTTTGCTGATCCGGAGGA 8339084 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| ||| ||| | | || | || || | | ||| | Sbjct 8339083 ATGCCTTCCTTGTCCTGGATCTTCGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACC 8339024 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || || ||||| |||||||| ||||| Sbjct 8339023 TCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 8338977 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| | ||| | ||| ||||| ||||| ||||||||||| Sbjct 6990198 CCACCACGGAGACGAAGCACGAGATGCAGGGTAGACTCTTTTTGGATGTTGTAATCAGCG 6990257 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || ||||| || || || |||| | | ||||||||| || ||| Sbjct 6990258 AGGGTACGTCCGTCTTCAAGCTGTTTCCCGGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 6990317 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| | | || ||||| | || | || || | | ||| | Sbjct 6990318 ATCCCTTCCTTGTC-TTGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTCTCAAC 6990376 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || |||||||| || ||||| ||||||||||| Sbjct 6990377 CTCCAAAGTGATAGTCTTGCCGGTTAGGGTCTTTACAAAAATCTGCAT 6990424 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAAT-CGCT 131066 ||||| || | ||| || || || || | ||||||||||| || |||||||||| |||| Sbjct 734881 CCACCACGAAGACGAAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCCGCT 734940 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| || || |||||||| || ||| |||| | | ||||||||| || || Sbjct 734941 -AGGGTGCGTCCATCTTCGAGCTGCTTCCCAGCGAAGATGAGTCTCTGCTGGTCTGGTGG 734999 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 ||| ||||| ||||| ||| ||| || |||| | || | || || | | ||| | Sbjct 735000 GATCCCTTCCTTGTC-CTGAATTTTAGCTTTGACGTTGTCGATTGTGTCTGAGCTCTCAA 735058 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| || || || || || || ||||| Sbjct 735059 CCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTCACAAAGATTTGCAT 735107 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | ||||||||||| || ||||||||||| | Sbjct 8339887 CCACCACGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCTGCC 8339828 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| ||||| || || ||| |||| | | |||||||||||||||| Sbjct 8339827 AGTGTCCGACCATCCTCAAGCTGTTTTCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGG 8339768 Query 131128 ATTCCTTCTTTGTC 131141 || ||||| ||||| Sbjct 8339767 ATCCCTTCCTTGTC 8339754 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||||| || || || | ||| ||||||||||| |||||||| || | Sbjct 14990611 CCTCCACGCAGACGCAAGACCAAGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCC 14990552 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | |||||| | |||||| || || |||| || | |||||||||||| ||| Sbjct 14990551 AAGGTTCTGCCGTCCTCCAACTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGG 14990492 Query 131128 ATTCCTTCTTTGTC 131141 || || |||||||| Sbjct 14990491 ATACCCTCTTTGTC 14990478 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 ||||| || || | |||||||||||| || |||||||| || || |||||| ||| Sbjct 14991052 AGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGACCATCC 14990993 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 || ||||| || || ||| |||| | |||||||||||| ||||| || ||||| || || Sbjct 14990992 TCAAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATACCTTCCTTATC 14990934 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | ||||||||||||||| || ||||| || Sbjct 6990654 CCACCACGAAGACGAAGTACAAGGTGAAGGGTCGACTCCTTTTGGATATTGTAGTCAGCA 6990713 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | ||| || ||||||||||| ||| | || | | |||||||||||| ||| Sbjct 6990714 AGAGTCCTTCCGTCTTCAAGCTGCTTGCCCGCGAATATAAGCCTCTGCTGGTCCGGTGGG 6990773 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| ||||| || ||| || |||| | || | || || | | ||| | Sbjct 6990774 ATTCCCTCTTTATCTTGGATCTTGGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAACC 6990833 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | |||||| || || | || || || || |||||||| Sbjct 6990834 TCGAGGGTGATGGTTTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 6990880 >seq5 Length=13709650 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| | ||| | ||||| ||||| || |||||||| ||| | Sbjct 13270598 CCACCACGGAGACGGAGCACCAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCC 13270539 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || |||||||| || ||| | || || |||||||||||||| ||| Sbjct 13270538 AGAGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAATATCAACCGCTGCTGGTCCGGTGGG 13270479 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| ||| || | | || | || || | ||||| | Sbjct 13270478 ATCCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATCGTGTCTGACGACTCCACC 13270419 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || ||||| ||||| ||||| |||||||| Sbjct 13270418 TCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 13270372 >seq4 Length=14994381 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | || |||||||| || |||||||| ||| Sbjct 14616824 CCACCACGGAGACGGAGGACAAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAGTCGGCT 14616765 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| |||||||| || ||| | || || |||||||||||||| ||| Sbjct 14616764 AAGGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGCGGG 14616705 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| || ||| | | || | || || | ||||| | Sbjct 14616704 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCAGATGACTCTACC 14616645 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || || ||||| ||||| ||||| |||||||| Sbjct 14616644 TCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 14616598 >seq7 Length=17303919 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || ||||| | || |||||||| || ||||||||||| | Sbjct 14231648 GCCACCACGAAGACGAAGAACCAAATGCAGAGTTGACTCCTTCTGGATGTTGTAATC-CG 14231706 Query 131067 CATG-GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || | || || ||||| || |||||||| || |||| | || || |||||||||| Sbjct 14231707 CAAGTGTCCGACCATCCTCGAGTTGCTTGCCCGCAAAGATAAGTCGTTGTTGGTCCGGAG 14231766 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| ||||| ||||| ||| || |||| | || | || || | | ||| | Sbjct 14231767 GGATCCCTTCCTTGTCTTGGATCTTGGCTTTGACATTGTCAATGGTGTCAGAGCTCTCAA 14231826 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | |||| |||||| ||||| |||||||| || || || |||||| Sbjct 14231827 CTTCTAGAGTAATGGTTTTGCCGGTGAGAGTTTTCACAAATATTTGCATG 14231876 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAAT-CGCT 131066 ||||| || | ||||||||||| || | || |||||||| || |||||||||| |||| Sbjct 14231421 CCACCACGAAGACGCAGCACTAGGTGAAGTGTTGACTCCTTCTGGATGTTGTAATCCGCT 14231480 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || ||||| || |||||||| ||| |||| | | ||||||||| || | Sbjct 14231481 -AGGGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATAAGTCTCTGCTGGTCTGGTAG 14231539 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||| || ||||| | || | || || | | || | Sbjct 14231540 GATCCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCTATTGTGTCTGAGCTTTCAAC 14231599 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | |||||| ||||| || || || ||||| || |||||| Sbjct 14231600 CTCCAGTGTTATGGTTTTTCCGGTAAGGGTCTTGACGAATATTTGCATG 14231648 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | ||| | || || || || | || |||||||| ||||| |||||||| Sbjct 14232332 GCCACCTCTCAACCTAAGAACCAAGTGAAGTGTTGACTCCTTCTGAATATTGTAATCAGC 14232391 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || ||||| || |||||||| || | ||| | | ||||||||||| | Sbjct 14232392 AAGGGTTCGACCATCCTCGAGTTGCTTGCCCGCATGGATAAGTCTTTGCTGGTCCGGTAG 14232451 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||||| | ||||| ||| || ||||| | || | || || | | ||| | Sbjct 14232452 GATTCCTACCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAAC 14232511 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| |||||| ||||| |||||||| || || || |||||| Sbjct 14232512 TTCTAGAATAATGGTTTTGCCGGTGAGAGTTTTCACAAATATTTGCATG 14232560 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | ||| | || || || |||| || |||||||||||||| ||||| || Sbjct 14232560 GCCACCTCTCAACCTAAGAACCAAGTGTAGAGTTGACTCCTTTTGAATATTGTAGTCAGC 14232619 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || || || || ||||||||||| |||| | | |||||||||||||| Sbjct 14232620 CAATGTACGACCATCTTCAAGTTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCCGGAGT 14232679 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| || || ||| || ||||| | || | || || | | || | Sbjct 14232680 AATACCTTCCTTATCTTGGATCTTAGCCTTGACATTGTCAATCGTGTCAGAGCTTTCAAC 14232739 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| ||||| || || || |||||||| Sbjct 14232740 CTCAAGAGTTATGGTCTTCCCGGTAAGAGTCTTAACAAAGATCTGCAT 14232787 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || | ||| | ||| |||||||| || ||||||||||| Sbjct 14231876 GCCACCACGAAGACGAAGGACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGC 14231935 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || |||||| || || || ||||| | || | | |||||||||||||| Sbjct 14231936 CAAAGTACGACCGTCCTCGAGTTGTTTACCTGCAAAAATAAGTCTCTGCTGGTCCGGAGT 14231995 Query 131127 GATTCCTTCTTTGTC 131141 ||| ||||| || || Sbjct 14231996 GATGCCTTCCTTATC 14232010 >seq1 Length=19566579 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || ||| ||||| ||||| | |||||||| || || |||||||| ||| Sbjct 8289972 CCTCCTCTCAGACGGAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGCG 8289913 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | | ||| || ||||| || || ||| |||| | ||||||||||||||| ||| Sbjct 8289912 AGTGTTCTCCCGTCTTCCAGCTGTTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGG 8289853 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| ||| || | | || | || || | ||||| | Sbjct 8289852 ATCCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATCGTGTCTGATGACTCTACC 8289793 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || |||| ||||| || || |||||||| Sbjct 8289792 TCTAGGGTTATTGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCAT 8289746 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||||||| | || | ||| ||||||||||| ||||||||||| Sbjct 19037896 CCACCACGAAGACGCAGCACAAGGTGAAGGGTTGACTCCTTTTGGATGTTGTAATCTGCA 19037837 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||| || || ||| |||| | | || ||||| || | | Sbjct 19037836 AGAGTGCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTTTGTTGGTCTGGTGCG 19037777 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | || | || || | | ||| | Sbjct 19037776 ATCCCTTCCTTGTCTTGGATCTTTGCCTTTACATTGTCAATTGTGTCCGAGCTCTCAACT 19037717 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| || || ||||| ||||||||||| Sbjct 19037716 TCCAAAGTTATTGTCTTTCCGGTAAGGGTCTTTACAAAAATCTGCAT 19037670 >seq2 Length=14066726 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | | ||| ||||| | ||| | || ||||||||||| ||||||||||| Sbjct 7053379 CCACCTCTGAGACGAAGCACAAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGCA 7053438 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||||| |||||| || || |||| | | |||||| |||||||| Sbjct 7053439 AGTGTGCGACCATCCTCTAACTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGA 7053498 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| | | |||| | | | || | |||||| | | ||| | Sbjct 7053499 ATCCCTTCCTTGTC-CTGAATCTTAGCTTTAACATTGTCAATAGTATCAGAGCTCTCAAC 7053557 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| |||||| || || | || || || || |||||||| Sbjct 7053558 CTCCAAAGTAATGGTTTTTCCTGTCAACGTCTTCACAAAGATCTGCAT 7053605 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | | ||| || || | ||| | || ||||||||||| ||||||||||| Sbjct 7053151 CCACCTCTGAGACGAAGTACAAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGCA 7053210 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||| || || || |||| | | ||| ||||| || ||| Sbjct 7053211 AGGGTGCGACCATCTTCAAGCTGTTTCCCAGCAAAGATGAGTCTCTGTTGGTCTGGTGGG 7053270 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| || || ||||| | || | || || | | ||| | Sbjct 7053271 ATTCCTTCCTTGTCCTGAATCTTAGCCTTGACGTTATCAATTGTGTCTGAGCTCTCAACC 7053330 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| || || || || ||||||||||| Sbjct 7053331 TCCAAAGTTATGGTCTTTCCGGTAAGGGTCTTCACAAAAATCTGCAT 7053377 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || ||||| || || |||||||| || ||| || ||||| ||||| || || Sbjct 7053637 GTTGATTCCTTCTGTATATTGTAATCCGCCAAGGTACGTCCATCCTCAAGCTGTTTACCG 7053696 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTG-CTT 131156 || |||| || | ||||| ||||||||||| ||||| ||||| ||| | | || ||| Sbjct 7053697 GCAAAGATCAATCTTTGCTGATCCGGAGGGATCCCTTCCTTGTC-CTGAATCTTTGCCTT 7053755 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 | | || | ||| || | | ||| | || | |||| ||| || || || || || Sbjct 7053756 AACATTGTCGATAGTGTCAGAGCTCTCTACCTCAAGAGTAATGGTCTTGCCAGTAAGTGT 7053815 Query 131217 TTTTACGAAAATCTGCAT 131234 ||| |||||||| ||||| Sbjct 7053816 TTTCACGAAAATTTGCAT 7053833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472008239176320