Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq6 123 2e-23 seq1 89.7 4e-13 seq5 84.2 2e-11 >seq6 Length=16577294 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || || || ||||||||||| ||||||||||| ||| Sbjct 14990611 CCTCCACGCAGACGCAAGACCAAGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCC 14990552 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| || |||||||||| || || || ||| | || | || ||| |||||| || Sbjct 14990551 AAGGTTCTGCCGTCCTCCAACTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGG 14990492 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || || || |||||| | | | | ||||| |||| Sbjct 14990491 ATACCCTCTTTGTCCTGGATCTTGGC--CTTCACGTTGTCGATGGTGTCAGAACTCTCCA 14990434 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||| || || ||||||| ||| |||||||| || ||||| Sbjct 14990433 CCTCCAAGGTGATAGTCTTCCCGGTCAACGTCTTGACAAAGATTTGCAT 14990385 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || ||||| || || | ||| || ||||||||||| || |||||||| ||||| Sbjct 14990383 CCTCCACGAAGCCTGAGAACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGCA 14990324 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| || ||||||| | ||| || || || | || | || ||| |||||| ||| Sbjct 14990323 AGGGTTCTGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 14990264 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || ||| || || | | | | ||||| |||| Sbjct 14990263 ATACCCTCCTTGTCTTGGATCTTGGCT--TTAACGTTGTCGATGGTGTCAGAACTCTCCA 14990206 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | || || || |||||||| || |||||||| ||||||||||| Sbjct 14990205 CCTCGAGAGTAATCGTCTTTCCGGTTAGGGTTTTGACGAAAATCTGCAT 14990157 Score = 109 bits (120), Expect = 4e-19 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | || |||| || || || |||||||| || ||||||||||||||| Sbjct 14990839 CCACCACGTAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCC 14990780 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||||||| || || || ||| | || | || ||| |||||| || Sbjct 14990779 AAGGTACGACCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGG 14990720 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGC--TC 16884 | ||||||||||| || || || |||||| | | | | |||| ||| || || Sbjct 14990719 ATACCCTCTTTGTCCTGGATCTTGGC--CTTCACGTTGTCGATGGTGT--CCGAGCTTTC 14990664 Query 16885 CGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| |||||| || |||||||| || ||||| || || |||||||| Sbjct 14990663 AACTTCCAAGGTGATTGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCAT 14990613 Score = 105 bits (116), Expect = 5e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || || ||||||||||| ||||||||||| |||| || | ||| Sbjct 14991280 AGGACGAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTGCGACCATCC 14991221 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | |||||||| || | || || ||||| |||||| ||| | || || ||||| Sbjct 14991220 TCAAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCC 14991161 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | | |||||| | |||| ||||| ||||||| Sbjct 14991160 TGGATCTTGGC--CTTCACATTGTCAATGGTGTCGGAGCTCTCCACTTCCAGTGTGATGG 14991103 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||||| || |||||||| |||||||| Sbjct 14991102 TCTTCCCGGTCAAGGTCTTGACAAAGATCTGCAT 14991069 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || |||||||| || || ||||||||||| || | || | | ||| Sbjct 735352 AGCACCAAATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCTAGTGTACGGCCATCC 735411 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || ||| | ||||||| |||||||||| ||| | || || ||||| Sbjct 735412 TCTAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGAGGGATACCTTCCTTGTCC 735471 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| ||| || | | | | |||||| | ||| || | |||||||| Sbjct 735472 TGGATCTTTGC--CTTGACGTTGTCGATAGTGTCAGAGCTCTCAACCTCGAGGGTGATGG 735529 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| || || |||||||| |||||||| Sbjct 735530 TCTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 735563 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||| || || |||||||| || ||||||||||| ||| Sbjct 2563294 CCACCACGGAGCCTGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 2563353 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || || ||||||| | ||| || || || | || |||| ||| |||||| || Sbjct 2563354 AAAGTCCTGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGG 2563413 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| || || || || || ||| || | | | | ||||| |||| Sbjct 2563414 ATTCCCTCCTTATCCTGGATCTTGGC--CTTAACGTTGTCGATGGTGTCAGAACTCTCCA 2563471 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || |||||||||||||| ||||| || || ||||| Sbjct 2563472 CCTCCAAAGTGATAGTCTTTCCGGTCAGCGTCTTGACGAAGATTTGCAT 2563520 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || |||| || || ||||| ||||| || ||||||||||| ||| Sbjct 14990155 CCACCACGGAGCCTGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCC 14990096 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | |||||||| || || || || | ||||||| ||| || ||| || Sbjct 14990095 AAGGTACGGCCATCCTCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGGGGA 14990036 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || ||| || | | | | ||||| | ||| Sbjct 14990035 ATGCCCTCCTTGTCCTGGATCTTGGC--CTTAACGTTGTCGATTGTGTCAGAGCTTTCCA 14989978 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| || |||||||| || || || || || |||||||| Sbjct 14989977 CCTCGAGGGTGATAGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 14989929 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||| || || |||||||| || ||||||||||| ||| Sbjct 2562838 CCACCACGGAGCCTGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 2562897 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||| | |||||||| || | || |||| ||| |||||| ||| Sbjct 2562898 AATGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGAGGG 2562957 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || || || |||||| | | | ||||| | ||| Sbjct 2562958 ATTCCTTCCTTGTCCTGGATCTTGGC--CTTCACGTTATCAATGGTGTCTGAGCTCTCAA 2563015 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| || || || ||||| || || ||||||||||||||||| Sbjct 2563016 CCTCCAAGGTTATTGTCTTGCCGGTGAGAGTCTTGACAAAAATCTGCAT 2563064 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || || ||||| || ||||||||||| |||| || ||||| Sbjct 2562625 AGGACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCTGCCAGTGTGCGACCGTCC 2562684 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || || | || || ||||| |||||| ||| | ||| || || || Sbjct 2562685 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTATCC 2562744 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | | |||||| | ||| || | |||||||| Sbjct 2562745 TGGATCTTGGC--CTTCACGTTGTCAATGGTGTCGGAGCTCTCAACCTCAAGGGTGATGG 2562802 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||||| ||| || |||||||||||||| Sbjct 2562803 TCTTCCCGGTCAACGTCTTCACAAAAATCTGCAT 2562836 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || |||| || || || |||||||| || ||||||||||| ||| Sbjct 14991067 CCACCACGGAGCCTTAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 14991008 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||| | ||||| || || | || || ||||| ||||| ||| Sbjct 14991007 AAGGTGCGACCATCCTCAAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGA 14990948 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || || || || || || |||||| | | | | ||||| |||| Sbjct 14990947 ATACCTTCCTTATCCTGGATCTTGGC--CTTCACGTTGTCAATGGTGTCAGAACTCTCCA 14990890 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||| || || ||||||| || |||||||| |||||||| Sbjct 14990889 CCTCCAAGGTGATAGTCTTCCCGGTCAAGGTCTTGACAAAGATCTGCAT 14990841 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||| | || || || ||||||||||| || |||||||| || | || | |||| Sbjct 6990669 AGTACAAGGTGAAGGGTCGACTCCTTTTGGATATTGTAGTCAGCAAGAGTCCTTCCGTCT 6990728 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || |||||||| | ||||||| ||| |||||| || | |||||||| || Sbjct 6990729 TCAAGCTGCTTGCCCGCGAATATAAGCCTCTGCTGGTCCGGTGGGATTCCCTCTTTATCT 6990788 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| || || | | | | ||||| | ||| || | |||||||| Sbjct 6990789 TGGATCTTGGCT--TTGACATTGTCAATGGTGTCTGAGCTCTCAACCTCGAGGGTGATGG 6990846 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || |||| || || ||||| |||||||| Sbjct 6990847 TTTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 6990880 >seq1 Length=19566579 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || | || |||| ||| ||||| ||||| || || |||||||||||||| Sbjct 8289972 CCTCCTCTCAGACGGAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGCG 8289913 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| |||| ||||| || || | || || ||||| |||||| || Sbjct 8289912 AGTGTTCTCCCGTCTTCCAGCTGTTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGG 8289853 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || || ||| ||||| | | | | ||||| | ||| Sbjct 8289852 ATCCCTTCCTTGTCTTGGATCTTCGCT--TTCACATTGTCGATCGTGTCTGATGACTCTA 8289795 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | ||| || || || || || | ||||| ||||| ||||||||||| Sbjct 8289794 CCTCTAGGGTTATTGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCATTTT 8289743 >seq5 Length=13709650 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| ||||| || ||||| || |||||||||||||||| || | |||| Sbjct 13270583 AGCACCAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGCCGTCT 13270524 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || || || || | || | |||||| |||||| || | || || ||||| Sbjct 13270523 TCCAGCTGCTTCCCGGCGAATATCAACCGCTGCTGGTCCGGTGGGATCCCTTCCTTGTCT 13270464 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| ||||| | | | | ||||| | |||| || | ||| |||| Sbjct 13270463 TGGATCTTCGCT--TTCACATTGTCGATCGTGTCTGACGACTCCACCTCTAGGGTTATGG 13270406 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 | || || || || ||||| || || |||||||| || Sbjct 13270405 TCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 13270369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405084183691270